Results

The following table shows, for each query, the reference species, the residue, its tblastn output, the scaffold or scaffolds selected, where is the gene located (the positions that the gene covers and the strand where it is located), the exonerate prediction for the protein, the T-coffee alignment for the best prediction, the Seblastian prediction and both the SECIS element predction and image.

The abbreviations used in the residue column are defined in this list:


Table of results


Protein Reference species Residue BLAST Scaffold Gene location
(Strand)
Exonerate T-coffee Seblastian SECIS prediction SECIS Image
Glutathione peroxidase
GPx1 H. sapiens Sec BHFT01025296.1 8179-10734
(-)
GPx2 H. sapiens Sec BHFT01049178.1 17974-21709
(+)
GPx3 H. sapiens Sec BHFT01000450.1 18185-27852
(+)
GPx4 H. sapiens Sec BHFT01021643.1 74379-76696
(-)
GPx5 H. sapiens
GPx6 H. sapiens
GPx7 H. sapiens Cys BHFT01060761.1 28537-34666
(-)
GPx8 H. sapiens Cys BHFT01032132.1 19841-21106
(+)
Iodothyronine deiodinase
DI1 H. sapiens Sec BHFT01004800.1 77633-80803
(+)
DI2 H. sapiens Sec BHFT01040576.1 8942-24344
(-)
DI3 H. sapiens Sec BHFT01042446.1 30323-30958
(+)
Selenoprotein M and Selenoprotein 15
SelM H. sapiens - BHFT01039670.1 34393-35460
(-)
Sel15 H. sapiens Sec BHFT01037660.1

BHFT01072119.1
27256-27426
(+)
3472-10778
(+)
Selenoprotein I
SelI H. sapiens Sec BHFT01018958.1 1698-30398
(+)
Selenoprotein K
SelK H. sapiens - BHFT01021730.1 62746-65818
(-)
Selenoprotein N
SelN H. sapiens Sec BHFT01034693.1 86313-102240
(+)
Selenoprotein O
SelO H. sapiens Sec BHFT01043593.1 12948-22955
(+)
Selenoprotein P
SelP H. sapiens Sec BHFT01045694.1 18567-21028
(+)
Methionine sulfoxide reductase A
MsrA H. sapiens Sec gain BHFT01047624.1 240191-248146
(+)
Methionine-R-sufoxide reductase
SelR1 H. sapiens Sec BHFT01066860.1 5298-6451
(-)
SelR2 H. sapiens
SelR3 H. sapiens Cys BHFT01052183.1

BHFT01016323.1
3919-6993
(+)
16832-30640
(-)
Selenoprotein S
SelS H. sapiens Sec BHFT01004014.1 18927-27341
(+)
RDX Family
SelH H. sapiens - BHFT01013888.1 68152-68232
(+)
SelT H. sapiens Sec BHFT01014671.1 34320-41681
(-)
SelV H. sapiens
SelW1 H. sapiens Sec gain BHFT01019166.1 23036-24652
(-)
SelW2 H. sapiens Cys BHFT01058988.1 12671-14402
(+)
Selenoprotein U
SelU1 H. sapiens Sec gain BHFT01004697.1 3867-17650
(+)
SelU2 H. sapiens Cys BHFT01039219.1 38278-43505
(-)
SelU3 H. sapiens
Thioredoxin reductase
TR1 H. sapiens - BHFT01035671.1 7161-18976
(-)
TR2 H. sapiens - BHFT01015136.1 15432-26802
(+)
TR3 H. sapiens Sec and Sec gain BHFT01035671.1 6086-31145
(-)
Eukaryotic Elongation Factor
eEFSec H.sapiens / BHFT01045288.1 27927-28595
(-)
Selenophosphate synthetases
SPS1 H.sapiens / BHFT01001630.1 15428-24655
(+)
SPS2 H.sapiens - BHFT01002322.1 67005-72421
(-)
SECIS Binding Protein 2
SBP2 H.sapiens / BHFT01074757.1

BHFT01003421.1
13451-18916
(+)
84740-90360
(-)