_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-51 Query name: gi|927130439|ref|XP_013909722.1| PREDICTED: selenoprotein O [Thamnophis sirtalis] Query range: 1-677 (total 677) Target: /data/www-rg/seblastian_results/195575364/tempfiles/temptarget.fasta Chromosome: BHFT01043593.1 Strand: + Positions: -Exon 1 12852 13384 -Exon 2 15362 15565 -Exon 3 16093 16273 -Exon 4 16894 17024 -Exon 5 18269 18549 -Exon 6 18730 18880 -Exon 7 21801 21986 -Exon 8 22299 22455 -Exon 9 22752 22955 Redox box: YES Query MAAALRCKRRCFGRLGSSVPGWLAAGRLLSMEAAASSSTPVPRWLSALRFDNRALRALPLDPSEENVPRAVSGACFSRVRPTPVRSPRLVAFSAPALALL |||||||/|||| || |/|||||| ||/||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| ||||| |||||||| Target MAAALRCERRCFSRL-RSLPGWLAATRLVSMEAAASSSTPAPRWLSALRLDNRALRALPLDPSEENVPRPVSGACFSRVLPTPVRCPRLVASSAPALALL agggcctgccttact-attcgttggaccgaaggggtttacgcctcagcccgacgccgcccgcaggagcccgtggtttcgccacgctcccggttgcgcgcc tccctggagggtggt-gctcggtcccgttgtaccccccccccggtgctgtaagctgctctacgaaatcgctcgcgtcgttccctggcgttcccccctctt gcctgctacccctcg-aggccgggctctccgggccgcgggcgggcctggcccgtggtgggtgcggcctgcggcctccgggcgaggcggggtccggggtgg Query GLREPQTAEEEDEAALCFSGNRPLPGAEPAAHCYCGHQFGNFAGQLGDGAAMYLGEVLNPTGERWEIQLKGAGLTPFSR <---Intron---> QADGR ||||||/ |||/|||||||||| |||||||||||||||||/||||||||||||||||||| |||||||||||||||||| < 1977bp > ||||| Target GLREPQSPEEEEEAALCFSGNRLLPGAEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLNPRGERWEIQLKGAGLTPFSR QADGR gcagccacgggggggcttagaccccgggcggctttgcctgatggccgggggatcgggtaccggctgaccagggcactta cgggc gtgacagcaaaaacctgtggagttcgcacccagaggaatggtcgatgagcctatgattacggaggatatagcgtcctcg acagg cggaggcgggaggcgtcccgcggggagggcctcccccgtcctggggcccgcgcgagggcgaggcggcgcgccacctcc aaatct Query KVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSEVIRDIFYDGNPKKEKCTIVLRIAPTFIR <---Intron---> FGSFEIFKSADELTGRKGPSV ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| < 527bp > |||||||||||| |||||||| Target KVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSEVIRDIFYDGNPKKEKCTIVLRIAPTFIR FGSFEIFKSADEFTGRKGPSV agcataaagtctaggatccgacaaaggatgatgtggacgattggacaagataagcaagcataa tgttgatatgggtagcagcag attgcgtgattggacttatgtcccgcgcgtccacattgattaagacaaaagctttgtcccttg tgctattaccaatcggagcgt atgaccaaactctatgttaaaaccaagataagtaattgtatttatcaaagtacaaaaaaatt gtaatattgtttataatatctt Query GRNDIRVQMLDYVISTFYPDILQTHPDNNVQRNAAFFRE <---Intron---> VSRRTARMVAEWQCVGFCHGVLNTDNMSVLGLTIDYGPFGFMDR |||||/||||||||||||||||||||| |||||||||| < 620bp > |||||||||||||||||||||||||||||||||||||||||||| Target DRNDIRIQMLDYVISTFYPDILQTHPDNIVQRNAAFFRE VSRRTARMVAEWQCVGFCHGVLNTDNMSVLGLTIDYGPFGFMDR gaagaaacacgtgaaattcgaccaccgaagcaaggttcg gtacagaagggtctggttcggcaagaaagcgcaagtgctgtaga agaatgtattaattgctacattacacaattagaccttga tcggccgttcagagtgtgagttacaatgttgtctaagctgttag tatttatagtttgccactattaaactctttgatttctag aaagacggttaggttattttggcattgtatatatctattatgt Query <---Intron---> YDPEHICNGSDNTGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPILEEEYDAEFEKHYLQIMRRKLGLIQLQLDEDNKLVSD < 1244bp > ||||||||||||/||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||/||||||| / Target YDPEHICNGSDNSGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPILEEEYDVEFEKHYLQIMRRKLGLIQLQIDEDNKLVLE tgcgcatagtgatgctgtaaccgatatacaatgggtgcgcccgaaacacgggtgggtgacttcaaaaacgtacccagggaacgtg aacaatgagcaacggacaaaacatgagatcatcacttcatctatgtcttaaaaatataaaatattggatgttatataaaaattta atctactctattcaaattttgaagttggtacattacacaataaaccgctgggactgatagttgacgagaatatgtgatattggcga Query LLETMHITG <---Intron---> ADFTNTFRLFNSFPLDFDPLNLEEFLDQISKQCASLEELKVAYKPQMDPR <---Intron---> QLSMMLMLA ||||||||| < 180bp > ||||||||| || |/||||||||||||||||||||||||||||||||||| < 2920bp > ||||||||| Target LLETMHITG ADFTNTFRLLNSCPVDFDPLNLEEFLDQISKQCASLEELKVAYKPQMDPR QLSMMLMLA ctgaacaag ggtaaatcttattcggtgctacggtcgcatactgttggtaggtaccagca cctaacatg ttactatc gcatcactgttacgctatactataattaatcaagcctaatatcaacatacg atctttttc cggtgcca tattattccggcattgttttacaagtgtgcaagtgaggagatctgtggtc aatcggggaa Query QSNPQLFALIGTKSNINQELERIEQFSKLQQLTTSDLVNRNKKTWKNWLQNYR <---Intron---> VRLEKEIEHISNTDTWHDERLKIMNASNPKY ||||||||| |||||||/||||||||||||||| ||||||||||| ||||||| < 312bp > ||||||/|/|||||||/|||||||||||||| Target QSNPQLFALFGTKSNINKELERIEQFSKLQQLTASDLVNRNKKTWTNWLQNYR VRLEKEMEYISNTDTWNDERLKIMNASNPKY ctaccctgttgaataaaagtgcagcttaccctagtgtgaaaaaataatccata gacgagagtaaaagataggccaaaagaacat acacattcttgcacataaatagtaatcataatcccattagaaacgcagtaaag tgtaaataatgacacgaaagtattacgacaa gtcaactcataagttctgagaaaagctgggaaatttactataacgatgggtc atgaagagactcttcggttgtgatgtcctaat Query ILRNYIAQKAIEAAENGDFLE <---Intron---> VRRVLKLLESPYEDSECFLEVSEEREEEESVMAAASAVATCSSGTQEKIPYSSKPPLWASELC ||||||||||||||||||||| < 296bp > ||||||||/ |||||| ||||||||/|||||||||||||||||||||/||||||||||||||| Target ILRNYIAQKAIEAAENGDFLE VRRVLKLLQRPYEDSEGFLEVSEERKEEESVMAAASAVATCSSGTQERIPYSSKPPLWASELC ataatagcagaggggaggtcg gaagtacccactggtggtcggtggaagggagagggtgggatatgacgaactaaaccctgtgct ttgaatcaactaccaagatta tggttattagcaaacagttatcaagaaaagttccccctccggcgcaagtcaggacctgccatg aggccttagttaaaatcctag gaacgacaagatataaccgaccgggggaatggattttttcccaacgaatatccgtatgatgct Query VTUSS ||||| Target VTUSS gattt tcgcc gaatg * Sequence until next stop: TAA * Distance CDS-SECIS: 274 ; UGA-SECIS: 280