The results of the analysis of Anarrhichthys ocellatus' selenoproteome are shown in the following table. We have presented the results in the same order that we found in the SelenoDB. The abbreviations used in the third column are defined in this list:

- NA: not applicable, there is a gap where should be a Sec.
- Sec-Sec: Sec can be found both species' proteins.
- Cys-Cys: Sec can be found both species' proteins.
- Sec lost: Sec can be found reference's protein but there is a Cys in the Anarrhichthys ocellatus'.
- Sec gain: Sec cannot be found in the reference's protein but has been gained in the Anarrhichthys ocellatus'.

The reference species has always been Danio rerio, Zebra Fish. By clicking to its icon () on the second row, the file with the specific protein in Zebra Fish will be opened. In the different columns an icon will be placed showing if there were any results obtained. If there is a cross (), no files will be attached, since nothing was fined or it was discarded, if there is a tick () the obtained filed can be accessed by clicking on it.

Description of selenoproteins

SELENOPROTEINS

415-kDa SELENOPROTEIN (Sel15)

Sel15

The protein Sel15 is located in the scaffold ML171018.1. It starts at the position 7,696,177 and finishes at 7,705,822 of the forward strand. Its gene has 5 exons and its structure is depicted below. Seblastian was able to predict one known selenoproteins and one SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 7,706,651 to 7,706,724 in the forward strand of the scaffold.

FISH SELENOPROTEIN 15 (SELENOE)

SELENOE

The protein SELENOE is located in the scaffold ML171012.1. It starts at the position 10,074,043 and finishes at 10,099,783 of the forward strand. Its gene has 5 exons. Seblastian was able to predict one known selenoproteins and one SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 10,099,812 to 10,099,904 in the forward strand of the scaffold.

GLUTATHIONE PEROXIDASE (GPx)

GPx1a

The protein GPx1a is located in the scaffold ML171004.1. It starts at the position 4,845,386 and finishes at 4,847,049 of the reverse strand. Its gene has 2 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found 2 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade B SECIS element that is located in the positions 4,835,999 to 4,836,064 in the reverse strand of the scaffold.

GPx1b

The protein GPx1b is located in the scaffold ML171004.1. It starts at the position 4,845,386 and finishes at 4,847,055 of the reverse strand. Its gene has 2 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found 2 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade B SECIS element that is located in the positions 4,835,987 to 4,836,042 in the reverse strand of the scaffold.

GPx2

The protein GPx2 is located in the scaffold ML171010.1. It starts at the position 2,574,254 and finishes at 2,575,284 of the forward strand. Its gene has 2 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade B SECIS element that is located in the positions 2,575,365 to 2,575,432 in the forward strand of the scaffold.

GPx3a

The protein GPx3a is located in the scaffold SAUM01028039.1. It starts at the position 1,681 and finishes at 3,145 of the reverse strand. Its gene has 4 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. However, the SECIS element is not related to the protein as it is not located in the 3’UTR region of the protein.

GPx3b

The protein GPx3b is located in the scaffold ML171010.1. It starts at the position 2,574,266 and finishes at 2,575,224 of the forward strand. Its gene has 2 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 1,593 to 1,505 in the reverse strand of the scaffold.

GPx4a

The protein GPx4a is located in the scaffold ML171018.1. It starts at the position 6,110,058 and finishes at 6,111,904 of the forward strand. Its gene has 3 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 6,112,456 to 6,112,535 in the forward strand of the scaffold.

GPx4b

The protein GPx4b is located in the scaffold ML171018.1. It starts at the position 6,110,058 and finishes at 6,112,094 of the forward strand. Its gene has 4 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus’ genome. The SECIS element is located in the positions 6,112,456 to 6,112,535 in the forward strand.

GPx7

The protein GPx7 is located in the scaffold ML171105.1. It starts at the position 215,359 and finishes at 224,106 of the forward strand. Its gene has 4 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. However, the SECIS element is not related to the protein as it is not located in the same strand.

GPx8

The protein GPx8 is located in the scaffold ML171018.1. It starts at the position 6,109,803 and finishes at 6,110,198 of the forward strand. Its gene has 2 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 6,112,456 to 6,112,535 in the forward strand of the scaffold.

IODOTHYRONINE DEIODINASE (DIO)

DIO1

The protein DIO1 is located in the scaffold ML171033.1. It starts at the position 4,280,707 and finishes at 4,281,570 of the reverse strand. Its gene has 3 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 4 SECIS elements using the protein sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade B SECIS element that is located in the positions 4,279,523 to 4,279,454 in the reverse strand of the scaffold.

DIO2

The protein DIO2 is located in the scaffold ML171039.1. It starts at the position 2,644,539 and finishes at 2,645,730 of the reverse strand. Its gene has 3 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 1 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade C SECIS element that is located in the positions 2,642,146 to 2,642,070 in the reverse strand of the scaffold.

DIO3a

The protein DIO3a is located in the scaffold ML171010.1. It starts at the position 6,024,708 and finishes at 6,025,457 of the forward strand. Its gene has one exon and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 3 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 6,025,837 to 6,025,910 in the forward strand of the scaffold.

DIO3b

The protein DIO3b is located in the scaffold ML171037.1. It starts at the position 1,318,673 and finishes at 1,318,696 of the forward strand. Its gene has 2 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 2 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 1,319,737 to 1,319,809 in the forward strand of the scaffold.

METHIONINE SULFOXIDE REDUCTASE A (MsrA)

MsrA.2

The protein MsrA.2 is located in the scaffold ML171010.1. It starts at the position 6,444,834 and finishes at 6,473,520 of the reverse strand. Its gene has 6 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one grade B SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. However, the SECIS element is not related to the protein as it is not located in the 3’UTR region of the protein.

SELENOPROTEIN H (SELENOH)

SELENOH

The protein SELENOH is located in the scaffold ML171030.1. It starts at the position 5,307,746 and finishes at 5,309,272 of the reverse strand. Its gene has 3 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 2 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 5,306,623 to 5,306,708 in the reverse strand of the scaffold.

SELENOPROTEIN I (SELENOI)

SELENOI

The protein SELENOI is located in the scaffold ML171024.1. It starts at the position 3,005,795 and finishes at 3,007,527 of the reverse strand. Its gene has 2 exons and its structure is depicted below. Seblastian was not able to predict any selenoprotein nor SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome.

SELENOPROTEIN J (SELENOJ)

SELENOJ1

The protein SELENOJ1 is located in the scaffold ML171018.1. It starts at the position 1,605,482 and finishes at 1,607,799 of the forward strand. Its gene has 8 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 2 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 1,608,059 to 1,608,134 in the forward strand of the scaffold.

SELENOPROTEIN K (SELENOK)

SELENOK

The protein SELENOK is located in the scaffold ML171008.1. It starts at the position 15,412,944 and finishes at 15,414,435 of the reverse strand. Its gene has 4 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein but it found one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 15,412,562 to 15,412,651 in the reverse strand of the scaffold.

SELENOPROTEIN L (SELENOL)

SELENOL

The protein SELENOL is located in the scaffold ML171028.1. It starts at the position 3,542,173 and finishes at 3,544,421 of the forward strand. Its gene has 4 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 3,544,578 to 3,544,655 in the forward strand of the scaffold.

SELENOPROTEIN M (SELENOM)

SELENOM

The protein SELENOM is located in the scaffold ML171020.1. It starts at the position 6,803,136 and finishes at 6,804,117 of the reverse strand. Its gene has 3 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 2 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 6,802,716 to 6,802,797 in the reverse strand of the scaffold.

SELENOPROTEIN N (SELENON)

SELENON

The protein SELENON/ is located in the scaffold ML171010.1. It starts at the position 5,820,485 and finishes at 5,825,237 of the reverse strand. Its gene has 12 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and 4 SECIS elements one using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 5,819,911 to 5,819,985 in the reverse strand of the scaffold.

SELENOPROTEIN O (SELENOO)

SELENOO1

The protein SELENOO1 is located in the scaffold ML171005.1. It starts at the position 16,648,471 and finishes at 16,652,697 of the reverse strand. Its gene has 9 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 16,647,828 to 16,647,906 in the reverse strand of the scaffold.

SELENOO2

The protein SELENOO2 is located in the scaffold ML171005.1. It starts at the position 16,648,471 and finishes at 16,652,625 of the reverse strand. Its gene has 9 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus’ genome. The SECIS element is located in the positions 16,647,828 to 16,647,906 in the reverse strand of the scaffold.

SELENOPROTEIN P (SELENOP)

SELENOP.1

The protein SELENOP is located in the scaffold ML171020.1. It starts at the position 3,354,804 and it finishes at 3,374,516 of the forward strand. Its gene has 4 exons and its structure is depicted below. Seblastian was able to predict 2 known selenoproteins and 3 SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 3,356,863 to 3,356,940 in the forward strand of the scaffold.

SELENOPROTEIN R (MSRB)

MSRB1a

The protein MSRB1a is located in the scaffold ML171065.1. It starts at the position 732,328 and finishes at 734,644 of the reverse strand. Its gene has 3 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 731,737 to 731,811 in the reverse strand of the scaffold.

MSRB1b

The protein MSRB1b is located in the scaffold ML171007.1. It starts at the position 12,203,395 and finishes at 12,204,414 of the forward strand. Its gene has 3 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 12,205,170 to 12,205,245 in the forward strand of the scaffold.

MSRB2

The protein MSRB2 is located in the scaffold ML171013.1. It starts at the position 1,967,174 and finishes at 1,968,489 of the reverse strand. Its gene has 4 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein but it found a grade B SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. However, the SECIS element is not related to the protein as it is not located in the 3’UTR region of the protein.

MSRB3

The protein MSRB3 is located in the scaffold ML171052.1. It starts at the position 1,206,137 and finishes at 1,213,944 of the forward strand. Its gene has 6 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein or SECIS element.

SELENOPROTEIN S (SELENOS)

SELENOS

The protein SELENOS is located in the scaffold ML171169.1. It starts at the position 39,504 and finishes at 43,350 of the reverse strand. Its gene has 5 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 39,191 to 39,277 in the reverse strand of the scaffold.

SELENOPROTEIN T (SELENOT)

SELENOT1

The protein SELENOT1 is located in the scaffold ML171018.1. It starts at the position 4,058,472 and finishes at 4,062,324 of the forward strand. Its gene has 5 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and two SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 4,062,582 to 4,062,655 in the forward strand of the scaffold.

SELENOT1b

The protein SELENOT1b is located in the scaffold ML171018.1. It starts at the position 4,058,541 and finishes at 4,062,369 of the forward strand. Its gene has 5 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and two SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 4,062,582 to 4,062,655 in the forward strand of the scaffold.

SELENOT2

The protein SELENOT2 is located in the scaffold ML171018.1. It starts at the position 4,058,529 and finishes at 4,062,369 of the forward strand. Its gene has 5 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and two SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. We accepted the grade A SECIS element that is located in the positions 4,062,582 to 4,062,655 in the forward strand of the scaffold.

SELENOPROTEIN U (SELENOU)

SELENOU1a

The protein SELENOU1a is located in the scaffold ML171007.1. It starts at the position 3,144,138 and finishes at 3,145,930 of the forward strand. Its gene has 5 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and a grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 3,146,158 to 3,146,231 in the forward strand of the scaffold.

SELENOU2

The protein SELENOU2 is located in the scaffold ML171020.1. It starts at the position 2,792,031 and finishes at 2,793,395 of the reverse strand. Its gene has 6 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein or SECIS element.

SELENOU3

The protein SELENOU3 is located in the scaffold ML171004.1. It starts at the position 3,710,546 and finishes at 3,714,761 of the reverse strand. Its gene has 6 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein or SECIS element.

SELENOPROTEIN W (SELENOW)

SELENOW.1

The protein SELENOW.1 is located in the scaffold ML171043.1. It starts at the position 2,322,485 and finishes at 2,323,358 of the reverse strand. Its gene has 4 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome, located in positions 2,322,257 to 2,322,332 in the reverse strand of the scaffold.

THIOREDOXIN REDUCTASE (TXNRD)

TXNRD2

The protein TXNRD2 is located in the scaffold ML171012.1. It starts at the position 7,098,500 and finishes at 7,116,906 of the forward strand. Its gene has 16 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome, located in positions 7,118,916 to 7,118,987 in the forward strand of the scaffold.

TXNRD3

The protein TXNRD3 is located in the scaffold ML171103.1. It starts at the position 142,478 and finishes at 152,676 of the reverse strand. Its gene has 16 exons and its structure is depicted below. Seblastian was able to predict one known selenoprotein and a grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. The SECIS element is located in the positions 142,122 to 142,202 in the reverse strand of the scaffold.

SELENOPROTEIN MACHINERY

EUKARYOTIC ELONGATION FACTOR (eEFsec)

eEFsec

The protein eEFsec is located in the scaffold ML171004.1. It starts at the position 7,462,225 and finishes at 7,471,326 of the reverse strand. Its gene has 7 exons and its structure is depicted below. Seblastian was not able to predict one known selenoprotein, but it found one grade B SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome, located in the positions 7,456,119 to 7,456,199. However, the SECIS element is not related to the protein as it is located in the forward strand.

PHOSPHOSERYL-tRNA KINASE (PSTK)

PSTK

The protein PSTK is located in the scaffold ML171007.1. It starts at the position 6,075,224 and finishes at 6,076,633 of the reverse strand. Its gene has 3 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. However, the SECIS element is not related to the protein as it is too far away from it so it was discarded.

SECIS BINDING PROTEIN 2 (SBP2)

SBP2.1

The protein SBP2.1 is located in the scaffold ML171012.1. It starts at the position 9,223,694 and finishes at 9,235,948 of the forward strand. Its gene has 10 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein but it found one grade A SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. However, the SECIS element is not related to the protein as it is not located in the 3’UTR region of the protein.

SELENOCYSTEINE SYNTHASE (SecS)

SecS

The protein SecS is located in the scaffold ML171014.1. It starts at the position 7,967,948 and finishes at 7,974,346 of the reverse strand. Its gene has 11 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one grade B SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome. However, the SECIS element is not related to the protein as it is too far away from it so it was discarded.

SELENOPHOSPHATE SYNTHETASE (SEPHS)

SEPHS

The protein SEPHS is located in the scaffold ML171005.1. It starts at the position 12,914,736 and finishes at 12,918,173 of the reverse strand. Its gene has 9 exons and its structure is depicted below. Seblastian was not able to predict any selenoprotein nor SECIS elements using the nucleoetide sequence predicted in Anarrhichtys ocellatus' genome.

SEPHS2

The protein SEPHS2 is located in the scaffold ML171005.1. It starts at the position 12,914,787 and finishes at 12,917,354 of the reverse strand. Its gene has 8 exons and its structure is depicted below. Seblastian was not able to predict any selenoprotein nor SECIS elements using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome.

tRNA SEC 1 ASSOCIATED PROTEIN 1 (SECp43)

SECp43.1

The protein SECp43.1 is located in the scaffold ML171132.1. It starts at the position 625,216 and finishes at 632,501 of the reverse strand. Its gene has 8 exons and its structure is depicted below. Seblastian was not able to predict any known selenoprotein, but it found one grade B SECIS element using the nucleotide sequence predicted in Anarrhichtys ocellatus' genome, however, the SECIS element is not related to the protein as it is too far away from it.

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