Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137834/Desktop/SelW2.fa -t genomic_SJYR01003240.1]
Hostname: [am32944-116076u]

C4 Alignment:
------------
         Query: SPP00000031_1.0  Protein  Selenoprotein W2 (SelW2)  Homo sapiens  Complete
        Target: SJYR01003240.1:subseq(46529,153824) Kobus ellipsiprymnus isolate DFW-375 scaffold3252_size200707, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 531
   Query range: 0 -> 115
  Target range: 99279 -> 100245

      1 : MetSerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProG :     20
          |||||||||!!: !!|||  !|||||||||||||||||||||! !|||..!|||||||
          MetSerGlyAspThrGlyThrThrSerValAlaProProProGlyGluThrGluProG
  99280 : ATGAGCGGGGATACAGGGACGACGTCCGTAGCGCCCCCTCCCGGGGAGACCGAACCGG :  99337

     21 : lySerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >> :     30
          ||  !||||||||||||||||||||||||{||}            104 bp       
          lyHisGlyValArgIleValValGluTyr{Cy}++                       
  99338 : GCCATGGGGTCCGCATTGTGGTTGAGTAC{TG}gt....................... :  99371

     31 : >>  {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLys :     47
              {|}|||||||||||||||||||||||||||||||||||||||||||||||||||
            ++{s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLys
  99372 : ..ag{C}GAACCCTGCGGCTTCGAGGCGACCTACCTGGAGCTGGCGAGTGCCGTGAAG :  99522

     48 : GluGlnTyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Tar :     63
          |||||||||||||||||||||||||||||||||||||||||||||{|}          
          GluGlnTyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}++        
  99523 : GAGCAGTATCCAGGCATCGAGATCGAGTCGCGCTTGGGGGGCACA{G}gt........ :  99573

     64 : get Intron 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPh :     75
            430 bp           {||}|||||||||||||||||||||||||||||||||||
                           ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPh
  99574 : .................ag{GG}GCCTTTGAGATTGAAATCAATGGACAGCTGGTGTT : 100036

     76 : eSerLysLeuGluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intr :     89
          ||||||||||||||||||||||||||||||||||||||||            87 bp 
          eSerLysLeuGluAsnGlyGlyPheProTyrGluLysAsp++                
 100037 : CTCCAAGCTGGAGAATGGGGGCTTTCCTTATGAGAAAGATgt................ : 100080

     90 : on 3 >>>>  LeuIleGluAlaIleArgArgAlaSerAsnGlyGluThrLeuGluLy :    104
                     |||||||||||||||||||||||||||||||||||| !!||||||||
                   ++LeuIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLy
 100081 : .........agCTCATTGAGGCTATCCGAAGAGCCAGTAACGGAGAACCCCTCGAAAA : 100210

    105 : sIleThrAsnSerArgProProCysValIleLeu :    115
          ||||||||||||||||||||||||||||||||||
          sIleThrAsnSerArgProProCysValIleLeu
 100211 : GATCACCAACAGCCGCCCTCCTTGTGTCATCCTG : 100245

vulgar: SPP00000031_1.0 0 115 . SJYR01003240.1:subseq(46529,153824) 99279 100245 + 531 M 29 87 S 0 2 5 0 2 I 0 100 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 426 3 0 2 S 1 2 M 25 75 5 0 2 I 0 83 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	gene	99280	100245	531	+	.	gene_id 1 ; sequence SPP00000031_1.0 ; gene_orientation +
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	cds	99280	99368	.	+	.	
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	exon	99280	99368	.	+	.	insertions 0 ; deletions 0
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	splice5	99369	99370	.	+	.	intron_id 1 ; splice_site "GT"
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	intron	99369	99472	.	+	.	intron_id 1
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	splice3	99471	99472	.	+	.	intron_id 0 ; splice_site "AG"
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	cds	99473	99570	.	+	.	
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	exon	99473	99570	.	+	.	insertions 0 ; deletions 0
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	splice5	99571	99572	.	+	.	intron_id 2 ; splice_site "GT"
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	intron	99571	100000	.	+	.	intron_id 2
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	splice3	99999	100000	.	+	.	intron_id 1 ; splice_site "AG"
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	cds	100001	100077	.	+	.	
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	exon	100001	100077	.	+	.	insertions 0 ; deletions 0
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	splice5	100078	100079	.	+	.	intron_id 3 ; splice_site "GT"
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	intron	100078	100164	.	+	.	intron_id 3
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	splice3	100163	100164	.	+	.	intron_id 2 ; splice_site "AG"
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	cds	100165	100245	.	+	.	
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	exon	100165	100245	.	+	.	insertions 0 ; deletions 0
SJYR01003240.1:subseq(46529,153824)	exonerate:protein2genome:local	similarity	99280	100245	531	+	.	alignment_id 1 ; Query SPP00000031_1.0 ; Align 99280 1 87 ; Align 99474 31 96 ; Align 100003 64 75 ; Align 100165 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
