Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137834/Desktop/SelW1.fa -t genomic_SJYR01001274.1]
Hostname: [am32944-116076u]

C4 Alignment:
------------
         Query: SPP00000030_1.0  Protein  Selenoprotein W1 (SelW1)  Homo sapiens  Complete
        Target: SJYR01001274.1:subseq(439994,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold1280_size907354, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 360
   Query range: 0 -> 85
  Target range: 99999 -> 100254

      1 : MetAlaLeuAlaValArgValValTyrCysGlyAlaUnkGlyTyrLysSerLysTyrL :     20
          !!:|||:!!!.!||||||||||||||||||||||||   ||||||||| !!|||||||
          IleAlaValValValArgValValTyrCysGlyAlaArgGlyTyrLysProLysTyrL
 100000 : ATAGCGGTTGTAGTCCGAGTGGTTTATTGTGGCGCTCGAGGCTACAAGCCCAAGTATC : 100057

     21 : euGlnLeuLysLysLysLeuGluAspGluPheProGlyArgLeuAspIleCysGlyGl :     39
          ||||||||!:!|||||||||! !!!:|||||||||||| !!|||||||||||||||||
          euGlnLeuArgLysLysLeuGlyGluGluPheProGlyCysLeuAspIleCysGlyGl
 100058 : TTCAGCTCAGGAAGAAGTTAGGAGAAGAGTTCCCTGGTTGCCTGGACATCTGCGGTGA : 100114

     40 : uGlyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuIleHis :     58
          |||||||||||||!.!||||||||||||||||||.!.|||||||||||||||||| !!
          uGlyThrProGlnValThrGlyPhePheGluValPheValAlaGlyLysLeuIleAsp
 100115 : GGGGACTCCACAGGTCACTGGTTTCTTTGAAGTGTTTGTAGCAGGAAAGCTGATTGAC : 100171

     59 : SerLysLysLysGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuValA :     78
          |||||||||  !||||||||||||||||||||||||||||||||||||||||||||||
          SerLysLysGlyGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuValA
 100172 : TCCAAGAAGGGAGGCGATGGCTACGTGGACACAGAGAGCAAGTTTCTGAAGCTGGTGG : 100231

     79 : laAlaIleLysAlaAlaLeuAla :     85
          ||.!!||||||||||||||||||
          laThrIleLysAlaAlaLeuAla
 100232 : CCACCATCAAAGCTGCTTTGGCT : 100254

vulgar: SPP00000030_1.0 0 85 . SJYR01001274.1:subseq(439994,200000) 99999 100254 + 360 M 85 255
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01001274.1:subseq(439994,200000)	exonerate:protein2genome:local	gene	100000	100254	360	+	.	gene_id 1 ; sequence SPP00000030_1.0 ; gene_orientation .
SJYR01001274.1:subseq(439994,200000)	exonerate:protein2genome:local	cds	100000	100254	.	+	.	
SJYR01001274.1:subseq(439994,200000)	exonerate:protein2genome:local	exon	100000	100254	.	+	.	insertions 0 ; deletions 0
SJYR01001274.1:subseq(439994,200000)	exonerate:protein2genome:local	similarity	100000	100254	360	+	.	alignment_id 1 ; Query SPP00000030_1.0 ; Align 100000 1 255
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
