Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137834/Desktop/SelU1.fa -t genomic_SJYR01001912.1]
Hostname: [am32944-116076u]

C4 Alignment:
------------
         Query: SPP00000026_1.0  Protein  Selenoprotein X1 (SelX1)  Homo sapiens  Complete
        Target: SJYR01001912.1:subseq(262613,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold1900_size1237457, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1032
   Query range: 0 -> 229
  Target range: 103802 -> 96179

      1 : MetSerPheLeuGlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaG :     20
          ||||||||||||||||||||||||||||||!:!|||||||||||||||||||||||||
          MetSerPheLeuGlnAspProSerPhePheSerMetGlyMetTrpSerIleGlyAlaG
 103802 : ATGTCTTTCCTCCAGGACCCCAGCTTCTTCAGCATGGGAATGTGGTCCATTGGTGCGG : 103745

     21 : lyAlaLeuGlyAlaAlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLeuSe :     39
          |||||:!!|||!.!|||||||||||||||!!!|||||||||||||||:!!||||||:!
          lyAlaIleGlyValAlaAlaLeuAlaLeuPheLeuAlaAsnThrAspMetPheLeuAl
 103744 : GGGCCATAGGTGTCGCTGCCTTGGCACTGTTCCTGGCCAACACAGACATGTTTCTGGC : 103688

     40 : rLysProGlnLysAlaAlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGlu :     58
          !|||||||||||||||||||||||||||||||||||||||||||||||||||:!!|||
          aLysProGlnLysAlaAlaLeuGluTyrLeuGluAspIleAspLeuLysThrMetGlu
 103687 : CAAGCCCCAGAAAGCAGCATTGGAGTATCTGGAGGACATAGACCTGAAAACAATGGAG : 103631

     59 : Lys{G}  >>>> Target Intron 1 >>>>  {lu}ProArgThrPheLysAlaL :     67
          |||{!}           2016 bp           {!:} !!  !|||||||||||||
          Lys{A}++                         ++{sp}AlaValThrPheLysAlaL
 103630 : AAG{G}gt.........................ag{AT}GCAGTAACTTTTAAAGCGA : 101588

     68 : ysGluLeuTrpGluLysAsnGlyAlaValIleMetAlaValArgArgProGlyCysPh :     86
          ||! !||||||||||||!!.||||||||||||||||||||||||||||||||||||||
          ysAlaLeuTrpGluLysLysGlyAlaValIleMetAlaValArgArgProGlyCysPh
 101587 : AGGCGCTCTGGGAGAAGAAGGGAGCTGTGATTATGGCTGTGCGGAGGCCAGGCTGCTT : 101531

     87 : eLeuCysArgGlu  >>>> Target Intron 2 >>>>  GluAlaAlaAspLeuS :     96
          |||||||||||||            646 bp           ||||||.!!|||||||
          eLeuCysArgGlu++                         ++GluAlaThrAspLeuS
 101530 : CCTCTGTCGGGAGgt.........................agGAGGCTACAGATTTGT : 100855

     97 : erSerLeuLysSerMetLeuAspGlnLeuGlyValProLeuTyrAlaValValLysGl :    115
          ||||||||||| !!! !||||||:!!||||||:!!|||||||||||||||||||||||
          erSerLeuLysProLysLeuAspGluLeuGlyIleProLeuTyrAlaValValLysGl
 100854 : CCTCCCTGAAGCCCAAGTTGGACGAGCTGGGCATCCCCCTCTATGCAGTGGTAAAGGA : 100798

    116 : uHisIleArgThrGluValLysAspPheGlnProTyrPheLysGlyGluIlePheLeu :    134
          |||||||!:!!.!|||||||||||||||||||||||||||||||||||||||||||||
          uHisIleLysAsnGluValLysAspPheGlnProTyrPheLysGlyGluIlePheLeu
 100797 : GCACATCAAGAATGAAGTTAAGGACTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTG : 100741

    135 : AspGluLys  >>>> Target Intron 3 >>>>  LysLysPheTyrGlyProGl :    144
          |||||||||            565 bp           ||||||||||||||||||||
          AspGluLys++                         ++LysLysPheTyrGlyProGl
 100740 : GATGAAAAGgt.........................agAAAAAGTTCTATGGCCCACA : 100146

    145 : nArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrpTyrAsnPhePhe :    163
          |!:!|||||||||:!!||||||||||||:!!||||||||||||||| ! |||||||||
          nLysArgLysMetValPheMetGlyPheValArgLeuGlyValTrpGlnAsnPhePhe
 100145 : AAAACGGAAGATGGTGTTCATGGGATTTGTCCGTTTGGGCGTCTGGCAAAACTTCTTC : 100089

    164 : ArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheIleLeuGlyG :    183
          |||||||||||||||||||||||||||||||||!!:||||||||||||||||||||||
          ArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuAspGlyGluGlyPheIleLeuGlyG
 100088 : CGGGCCTGGAATGGAGGCTTTTCTGGAAACCTGGATGGCGAGGGCTTCATCCTTGGGG : 100029

    184 : lyValPheValValGlySerGlyLysGln  >>>> Target Intron 4 >>>>   :    193
          |||||||||||:!!||| !!|||||||||           3709 bp           
          lyValPheValMetGlyProGlyLysGln++                         ++
 100028 : GAGTCTTTGTGATGGGACCAGGAAAGCAGgt.........................ag :  96292

    194 : GlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuLeuSerV :    212
          |||||||||||||||||||||||||||||||||||||||||||||||||||  !||||
          GlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuThrSerV
  96291 : GGCATTCTTCTCGAGCACCGAGAAAAAGAATTTGGAGACAAAGTAAACCTGACTTCTG :  96233

    213 : alLeuGluAlaAlaLysMetIleLysProGlnThrLeuAlaSerGluLysLys :    229
          |||||||||||||||||! !|||!:!|||||| !!! !||||||||||||:!!
          alLeuGluAlaAlaLysLysIleArgProGlnProSerAlaSerGluLysGln
  96232 : TTCTGGAAGCTGCTAAGAAGATCAGACCACAGCCTTCGGCCTCAGAGAAACAA :  96180

vulgar: SPP00000026_1.0 0 229 . SJYR01001912.1:subseq(262613,200000) 103802 96179 - 1032 M 59 177 S 0 1 5 0 2 I 0 2012 3 0 2 S 1 2 M 30 90 5 0 2 I 0 642 3 0 2 M 47 141 5 0 2 I 0 561 3 0 2 M 55 165 5 0 2 I 0 3705 3 0 2 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	gene	96180	103802	1032	-	.	gene_id 1 ; sequence SPP00000026_1.0 ; gene_orientation +
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	cds	103625	103802	.	-	.	
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	exon	103625	103802	.	-	.	insertions 0 ; deletions 0
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice5	103623	103624	.	-	.	intron_id 1 ; splice_site "GT"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	intron	101609	103624	.	-	.	intron_id 1
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice3	101609	101610	.	-	.	intron_id 0 ; splice_site "ag"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	cds	101517	101608	.	-	.	
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	exon	101517	101608	.	-	.	insertions 0 ; deletions 0
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice5	101515	101516	.	-	.	intron_id 2 ; splice_site "GT"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	intron	100871	101516	.	-	.	intron_id 2
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice3	100871	100872	.	-	.	intron_id 1 ; splice_site "AG"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	cds	100730	100870	.	-	.	
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	exon	100730	100870	.	-	.	insertions 0 ; deletions 0
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice5	100728	100729	.	-	.	intron_id 3 ; splice_site "GT"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	intron	100165	100729	.	-	.	intron_id 3
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice3	100165	100166	.	-	.	intron_id 2 ; splice_site "AG"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	cds	100000	100164	.	-	.	
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	exon	100000	100164	.	-	.	insertions 0 ; deletions 0
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice5	99998	99999	.	-	.	intron_id 4 ; splice_site "GT"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	intron	96291	99999	.	-	.	intron_id 4
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	splice3	96291	96292	.	-	.	intron_id 3 ; splice_site "AG"
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	cds	96180	96290	.	-	.	
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	exon	96180	96290	.	-	.	insertions 0 ; deletions 0
SJYR01001912.1:subseq(262613,200000)	exonerate:protein2genome:local	similarity	96180	103802	1032	-	.	alignment_id 1 ; Query SPP00000026_1.0 ; Align 103803 1 177 ; Align 101607 61 90 ; Align 100871 91 141 ; Align 100165 138 165 ; Align 96291 193 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
