Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/SelN.fa -t genomic_SJYR01001322.1]
Hostname: [am33123-116042u]

C4 Alignment:
------------
         Query: SPP00000018_1.0  Protein  Selenoprotein N (SelN)  Homo sapiens  Complete
        Target: SJYR01001322.1:subseq(0,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold1323_size890857, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2361
   Query range: 37 -> 590
  Target range: 141672 -> 3198

     38 : LeuAlaAlaAlaAlaAlaAlaAlaValArgValCysAlaArgHisAlaGluAla{G}  :     56
          |||||||||||||||||||||...|||..! !!   ! !|||!!..!!  !  !{.} 
          LeuAlaAlaAlaAlaAlaAlaValValAsnPheGlnAspArgGlnThrTrpLys{S}+
 141672 : ttagcagcagcagcagcagcagttgttaaTTTTCAGGACAGACAGACTTGGAAA{T}g : 141617

     57 :  >>>> Target Intron 1 >>>>  {ln}AlaAlaAlaArgGlnGluLeuAlaLe :     65
                   120828 bp          {.!} !! !! !!!:!|||!!:! !|||||
          +                         ++{er}ProProProLysGlnAspSerAlaLe
 141616 : t.........................ag{CG}CCTCCTCCCAAGCAGGATTCAGCACT :  20763

     66 : uLysThrLeuGlyThrAspGlyLeuPheLeuPheSerSerLeuAspThrAspGlyAsp :     84
          ||||.!!|||||||||!!:||||||||||||||||||||||||||||||||| !!|||
          uLysAlaLeuGlyThrGluGlyLeuPheLeuPheSerSerLeuAspThrAspArgAsp
  20762 : GAAAGCCCTGGGGACAGAAggcctcttcctcttctcctccctggaCACTGACCGGGAC :  20706

     85 : MetTyrIleSerProGluGluPheLysProIleAlaGluLysLeuThrGlySerCysS :    104
          ||||||||||||||||||||||||||||||:!!||||||||||||||||||!!! ! !
          MetTyrIleSerProGluGluPheLysProValAlaGluLysLeuThrGlyThrArgA
  20705 : ATGTACATCAGCCCGGAGGAGTTCAAGCCCGTCGCTGAGAAGCTGACAGGTACCAGGA :  20646

    105 : erValThrGlnThrGlyValGlnTrpCysSerHisSerSerLeuGlnProGlnLeuPr :    123
          !!! !  !  ! !!|||  !::!      .!!||| !! !!|||   ! !   |||  
          rgGlyTrpAlaProGlyArgArgAspLeuGlyHisArgProLeuValLeuValLeuCy
  20645 : GGGGCTGGGCACCCGGGAGGAGGGACCTGGGGCACCGCCCTCTGGTTCTTGTTCTGTG :  20589

    124 : oTrpLeuAsnUnkSerSerCysLeuSerLeuLeu{A}  >>>> Target Intron  :    135
          !  !|||:::....!!.!!   ! !.!!:!!  !{ }           4477 bp   
          sLeuLeuSerAlaGlyGlyLeuProGlyValGly{G}+-                   
  20588 : TCTGCTCTCAGCAGGAGGACTGCCTGGAGTAGGA{G}ga................... :  20550

    136 : 2 >>>>  {rg}SerThrProAlaAlaSerCysGluGluGluGluLeuProProAspP :    151
                  {!!}|||! !|||.!!||||||! !|||||||||||||||||||||||||
                ++{ly}SerIleProThrAlaSerTyrGluGluGluGluLeuProProAspP
  20549 : ......ag{GG}TCAATTCCTACGGCCAGCTATGAGGAAGAGGAGCTGCCCCCTGACC :  16028

    152 : roSerGluGluThrLeuThrIleGluAlaArgPheGlnProLeuLeuProGluThrMe :    170
          |||||||||||||||||||||||||||||||||||||||||||||||||||||:!!||
          roSerGluGluThrLeuThrIleGluAlaArgPheGlnProLeuLeuProGluSerMe
  16027 : CCAGCGAGGAGACTCTCACCATAGAAGCCCGATTCCAGCCTCTGCTCCCTGAGTCCAT :  15971

    171 : tThrLysSerLysAspGlyPheLeuGly  >>>> Target Intron 3 >>>>  V :    180
          ||||||||||||||||||||||||||||           2698 bp           |
          tThrLysSerLysAspGlyPheLeuGly++                         ++V
  15970 : GACCAAGAGCAAAGATGGATTCCTAGGGgt.........................agG :  13243

    181 : alSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThrAlaAlaAlaSerProSerAl :    199
          ||||||||||||||||||||||||||||||||||||||.!!|||||||||||||||||
          alSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThrThrAlaAlaSerProSerAl
  13242 : TGTCCCGCCTGGCCCTGTCTGGCCTCCGCAACTGGACCACGGCAGCCTCGCCCAGCGC :  13186

    200 : aValPheAlaThrArgHisPheGlnProPheLeuProProProGlyGln<->GluLeu :    217
          ||||||||||.!!|||||||||!:!|||||||||||||||! !|||!!.   ||||||
          aValPheAlaAlaArgHisPheArgProPheLeuProProArgGlyHisValGluLeu
  13185 : TGTGTTTGCCGCCCGCCACTTCCGGCCCTTCCTCCCGCCCCGGGGCCACGTGGAGCTG :  13129

    218 : GlyGluProTrpTrpIleIleProSerGluLeuSerMetPheThrGlyTyrLeuSerA :    237
          ||||||||||||||||||||||||||||||||||||:!:|||||||||||||||||||
          GlyGluProTrpTrpIleIleProSerGluLeuSerValPheThrGlyTyrLeuSerA
  13128 : GGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGTCTTCACCGGCTACCTGTCCA :  13069

    238 : snAsnArgPheTyrProProProProLysGlyLysGlu  >>>> Target Intron :    250
          ||||||||||||||||||||||||||||||||||||||            177 bp  
          snAsnArgPheTyrProProProProLysGlyLysGlu++                  
  13068 : ACAACCGCTTCTACCCACCGCCGCCCAAGGGCAAGGAGgt.................. :  13028

    251 :  4 >>>>  ValIleIleHisArgLeuLeuSerMetPheHisProArgProPheValL :    266
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++ValIleIleHisArgLeuLeuSerMetPheHisProArgProPheValL
  13027 : .......agGTCATCATCCACCGGCTCCTGAGCATGTTCCACCCACGGCCCTTCGTGA :  12805

    267 : ysThrArgPheAlaProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTy :    285
          ||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||
          ysThrArgPheAlaProGlnGlyAlaValAlaCysLeuThrAlaValSerAspPheTy
  12804 : AGACCCGTTTCGCCCCTCAGGGGGCCGTGGCCTGCCTGACCGCCGTCAGCGACTTCTA :  12748

    286 : rTyrThrValMetPhe{Ar}  >>>> Target Intron 5 >>>>  {g}IleHis :    293
          ||||||||||||||||{||}            572 bp           {|}||||||
          rTyrThrValMetPhe{Ar}++                         ++{g}IleHis
  12747 : TTACACCGTGATGTTC{CG}gt.........................ag{C}ATCCAC :  12152

    294 : AlaGluPheGlnLeuSerGluProProAspPheProPheTrpPheSerProAlaGlnP :    313
          |||||||||||||||||||||||||||||||||||||||||||||||||||!.!||||
          AlaGluPheGlnLeuSerGluProProAspPheProPheTrpPheSerProGlyGlnP
  12151 : GCCGAGTTCCAGCTCAGCGAGCCCCCCGACTTCCCCTTCTGGTTCTCCCCCGGCCAGT :  12092

    314 : heThrGlyHisIleIleLeuSerLysAspAlaThrHisValArgAspPheArgLeuPh :    332
          ||||||||||||||||||||||||||||||||||||||:!!|||||||||||||||||
          heThrGlyHisIleIleLeuSerLysAspAlaThrHisIleArgAspPheArgLeuPh
  12091 : TCACCGGCCACATCATCCTCTCCAAAGATGCCACCCACATCCGTGACTTCCGGCTCTT :  12035

    333 : eValProAsnHis{Ar}  >>>> Target Intron 6 >>>>  {g}SerLeuAsn :    340
          |||||||||||||{||}           4517 bp           {|}|||||||||
          eValProAsnHis{Ar}++                         ++{g}SerLeuAsn
  12034 : CGTGCCCAACCAC{AG}gt.........................ag{G}TCTCTGAAT :   7494

    341 : ValAspMetGluTrpLeuTyrGlyAlaSerGluSerSerAsnMetGluValAspIleG :    360
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValAspMetGluTrpLeuTyrGlyAlaSerGluSerSerAsnMetGluValAspIleG
   7493 : GTGGACATGGAGTGGCTGTATGGGGCCAGTGAGAGCAGCAACATGGAGGTGGACATCG :   7434

    361 : lyTyrIleProGln  >>>> Target Intron 7 >>>>  MetGluLeuGluAla :    369
          ||||||||||||||            616 bp           |||||||||||||||
          lyTyrIleProGln++                         ++MetGluLeuGluAla
   7433 : GCTACATACCCCAGgt.........................agATGGAGCTGGAGGCG :   6791

    370 : ThrGlyProSerValProSerValIleLeuAspGluAspGlySerMetIleAspSerH :    389
            !|||||||||||||||||||||||||||||||||||||||!:!:!!|||||||||!
          LeuGlyProSerValProSerValIleLeuAspGluAspGlyAsnLeuIleAspSerA
   6790 : CTGGGCCCCTCGGTGCCCTCCGTGATCCTGGACGAGGATGGCAACCTGATCGACAGCC :   6731

    390 : isLeuProSerGlyGluProLeuGlnPheValPheGluGluIleLysTrpGlnGlnGl :    408
          .!||||||||||||||||||||||||||||||||||||||||||::!|||||||||||
          rgLeuProSerGlyGluProLeuGlnPheValPheGluGluIleArgTrpGlnGlnGl
   6730 : GCCTGCCCTCAGGGGAGCCCCTCCAGTTTGTGTTTGAGGAGATCCGGTGGCAGCAGGA :   6674

    409 : uLeuSerTrpGluGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys :    427
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uLeuSerTrpGluGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys
   6673 : GCTGAGCTGGGAGGAGGCAGCCCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAG :   6617

    428 :   >>>> Target Intron 8 >>>>  ValSerTyrLeuProPheThrGluAlaPh :    437
                      372 bp           |||!!!|||||||||||||||||||||||
          ++                         ++ValThrTyrLeuProPheThrGluAlaPh
   6616 : gt.........................agGTCACCTACCTGCCGTTCACTGAGGCCTT :   6215

    438 : eAspArgAlaLysAlaGluAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeu :    456
          ||||!:!|||||||||:!!|||||||||||||||||||||||||||||||||||||||
          eAspGlnAlaLysAlaLysAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeu
   6214 : TGACCAAGCCAAGGCCAAGAACAAGCTGGTGCACTCAATCCTGCTGTGGGGGGCCCTG :   6158

    457 : AspAspGlnSerCysUnk{G}  >>>> Target Intron 9 >>>>  {ly}SerG :    465
          |||||||||||||||   {|}           1067 bp           {||}||||
          AspAspGlnSerCys***{G}++                         ++{ly}SerG
   6157 : GACGACCAGTCCTGCTGA{G}gt.........................ag{GT}TCGG :   5064

    466 : lyArgThrLeuArgGluThrValLeuGluSerSerProIleLeuThrLeuLeuAsnGl :    484
          ||||||||||||||||||||||||||||||||||||||||||||.!!|||||||||||
          lyArgThrLeuArgGluThrValLeuGluSerSerProIleLeuAlaLeuLeuAsnGl
   5063 : GGCGGACTCTCCGGGAGACTGTCCTGGAAAGTTCGCCCATCCTCGCCCTCCTCAACGA :   5007

    485 : uSerPheIleSerThrTrpSerLeuValLysGluLeuGluGluLeuGln  >>>> Ta :    501
          ||||||||||||||||||||||||||||||||||||||||!!:||||||         
          uSerPheIleSerThrTrpSerLeuValLysGluLeuGluAspLeuGln++       
   5006 : GAGCTTCATCAGCACCTGGTCCCTGGTGAAGGAGCTGGAGGACCTGCAGgt....... :   4954

    502 : rget Intron 10 >>>>  AsnAsnGlnGluAsnSerSerHisGlnLysLeuAlaG :    513
              89 bp            ||||||||||||||| !!||||||||||||||||||.
                             ++AsnAsnGlnGluAsnProSerHisGlnLysLeuAlaS
   4953 : ...................agAACAACCAGGAGAACCCATCCCACCAGAAGCTGGCCA :   4831

    514 : lyLeuHisLeuGluLysTyrSerPheProValGluMetMetIleCysLeuProAsnGl :    532
          !!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erLeuHisLeuGluLysTyrSerPheProValGluMetMetIleCysLeuProAsnGl
   4830 : GCCTGCACCTGGAGAAGTACAGCTTCCCCGTGGAGATGATGATCTGCCTGCCCAACGG :   4774

    533 : yThrVal  >>>> Target Intron 11 >>>>  ValHisHisIleAsnAlaAsn :    541
          |||||||            1399 bp           |||||||||||||||||||||
          yThrVal++                          ++ValHisHisIleAsnAlaAsn
   4773 : CACCGTGgt..........................agGTCCACCACATCAATGCCAAC :   3348

    542 : TyrPheLeuAspIleThrSerValLysProGluGluIleGluSerAsnLeuPheSerP :    561
          |||||||||||||||||||||:!!|||||||||!!:||||||!:!:!!:!!|||||||
          TyrPheLeuAspIleThrSerMetLysProGluAspIleGluAsnHisValPheSerP
   3347 : TACTTCTTGGACATCACATCCATGAAGCCCGAGGACATTGAGAACCACGTCTTCAGCT :   3288

    562 : heSerSerThrPheGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGl :    580
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          heSerSerThrPheGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGl
   3287 : TCTCGTCCACCTTTGAAGACCCGTCCACGGCCACCTACATGCAGTTCTTGAAGGAGGG :   3231

    581 : yLeuArgArgGlyLeuProLeuLeuGlnPro :    590
          |||||||||||||||||||||||||||||||
          yLeuArgArgGlyLeuProLeuLeuGlnPro
   3230 : CCTCCGGCGCGGgctgcccctcctccagccc :   3199

vulgar: SPP00000018_1.0 37 590 . SJYR01001322.1:subseq(0,200000) 141672 3198 - 2361 M 18 54 S 0 1 5 0 2 I 0 120824 3 0 2 S 1 2 M 78 234 S 0 1 5 0 2 I 0 4473 3 0 2 S 1 2 M 44 132 5 0 2 I 0 2694 3 0 2 M 36 108 G 0 3 M 34 102 5 0 2 I 0 173 3 0 2 M 41 123 S 0 2 5 0 2 I 0 568 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 4513 3 0 2 S 1 1 M 27 81 5 0 2 I 0 612 3 0 2 M 63 189 5 0 2 I 0 368 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1063 3 0 2 S 1 2 M 37 111 5 0 2 I 0 85 3 0 2 M 34 102 5 0 2 I 0 1395 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	gene	3199	141672	2361	-	.	gene_id 1 ; sequence SPP00000018_1.0 ; gene_orientation +
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	141618	141672	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	141618	141672	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	141616	141617	.	-	.	intron_id 1 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	20790	141617	.	-	.	intron_id 1
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	20790	20791	.	-	.	intron_id 0 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	20553	20789	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	20553	20789	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	20551	20552	.	-	.	intron_id 2 ; splice_site "GA"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	16076	20552	.	-	.	intron_id 2
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	16076	16077	.	-	.	intron_id 1 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	15942	16075	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	15942	16075	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	15940	15941	.	-	.	intron_id 3 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	13244	15941	.	-	.	intron_id 3
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	13244	13245	.	-	.	intron_id 2 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	13031	13243	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	13031	13243	.	-	.	insertions 3 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	13029	13030	.	-	.	intron_id 4 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	12854	13030	.	-	.	intron_id 4
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	12854	12855	.	-	.	intron_id 3 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	12729	12853	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	12729	12853	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	12727	12728	.	-	.	intron_id 5 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	12157	12728	.	-	.	intron_id 5
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	12157	12158	.	-	.	intron_id 4 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	12019	12156	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	12019	12156	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	12017	12018	.	-	.	intron_id 6 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	7502	12018	.	-	.	intron_id 6
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	7502	7503	.	-	.	intron_id 5 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	7420	7501	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	7420	7501	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	7418	7419	.	-	.	intron_id 7 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	6804	7419	.	-	.	intron_id 7
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	6804	6805	.	-	.	intron_id 6 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	6615	6803	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	6615	6803	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	6613	6614	.	-	.	intron_id 8 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	6243	6614	.	-	.	intron_id 8
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	6243	6244	.	-	.	intron_id 7 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	6137	6242	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	6137	6242	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	6135	6136	.	-	.	intron_id 9 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	5070	6136	.	-	.	intron_id 9
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	5070	5071	.	-	.	intron_id 8 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	4957	5069	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	4957	5069	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	4955	4956	.	-	.	intron_id 10 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	4868	4956	.	-	.	intron_id 10
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	4868	4869	.	-	.	intron_id 9 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	4766	4867	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	4766	4867	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	4764	4765	.	-	.	intron_id 11 ; splice_site "GT"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	intron	3367	4765	.	-	.	intron_id 11
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	3367	3368	.	-	.	intron_id 10 ; splice_site "AG"
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	cds	3199	3366	.	-	.	
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	exon	3199	3366	.	-	.	insertions 0 ; deletions 0
SJYR01001322.1:subseq(0,200000)	exonerate:protein2genome:local	similarity	3199	141672	2361	-	.	alignment_id 1 ; Query SPP00000018_1.0 ; Align 141673 38 54 ; Align 20788 57 234 ; Align 16074 136 132 ; Align 13244 180 108 ; Align 13133 216 102 ; Align 12854 250 123 ; Align 12156 292 135 ; Align 7501 338 81 ; Align 6804 365 189 ; Align 6243 428 105 ; Align 5068 464 111 ; Align 4868 501 102 ; Align 3367 535 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
