Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137237/Desktop/SelI.fa -t genomic_SJYR01000634.1]
Hostname: [am33124-116039u]

C4 Alignment:
------------
         Query: SPP00000015_1.0  Protein  Selenoprotein I (SelI)  Homo sapiens  Complete
        Target: SJYR01000634.1:subseq(374996,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold642_size862944, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1924
   Query range: 0 -> 397
  Target range: 124300 -> 85206

      1 : MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLys  :     20
          ||||||.!!|||||||||||||||||||||||||||||||||||||||||||||||| 
          MetAlaSerTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLys+
 124300 : ATGGCAAGTTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGg : 124243

     21 :  >>>> Target Intron 1 >>>>  TyrSerAlaValAspThrAsnProLeuSer :     29
                    18682 bp          ||||||||||||||||||||||||||||||
          +                         ++TyrSerAlaValAspThrAsnProLeuSer
 124242 : t.........................agtACAGTGCTGTGGATACCAATCCACTCTCT : 105534

     30 : LeuTyrValMetHisProPheTrpAsnThrIleValLys  >>>> Target Intro :     43
          ||||||||||||||||||||||||||||||:!!||||||            449 bp 
          LeuTyrValMetHisProPheTrpAsnThrValValLys++                 
 105533 : CTGTATGTCATGCACCCATTTTGGAACACTGTAGTAAAGgt................. : 105490

     44 : n 2 >>>>  ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPhe :     58
                    ||||||||||||||||||||||||||||||||||||||||||||||||
                  ++ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPhe
 105489 : ........aggtATTTCCTACTTGGCTGGCTCCAAATCTGATAACCTTCTCTGGCTTT : 104998

     59 : LeuLeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaS :     78
          |||||||||||||||||||||||||||:!!||||||||||||||||||||||||||||
          LeuLeuValValPheAsnPheLeuLeuLeuAlaTyrPheAspProAspPheTyrAlaS
 104997 : CTGCTGGTTGTGTTCAATTTTCTACTTTTGGCATATTTTGATCCTGACTTTTATGCTT : 104938

     79 : er{A}  >>>> Target Intron 3 >>>>  {la}ProGlyHisLysHisValPr :     86
          ||{|}           2270 bp           {||}||||||||||||||||||||
          er{A}++                         ++{la}ProGlyHisLysHisValPr
 104937 : CA{G}gt.........................ag{CA}CCAGGTCATAAGCATGTACC : 102644

     87 : oAspTrpValTrpIleValValGlyIleLeuAsnPheValAlaTyrThrLeu{A}  > :    104
          |||||||||||||||||||||||||||||||||||||:!!||||||||||||{|}   
          oAspTrpValTrpIleValValGlyIleLeuAsnPheMetAlaTyrThrLeu{A}++ 
 102643 : CGACTGGGTCTGGATTGTAGTGGGCATCCTCAACTTCATGGCCTACACTCTA{G}gt. : 102587

    105 : >>> Target Intron 4 >>>>  {sp}GlyValAspGlyLysGlnAlaArgArgT :    114
                  2327 bp           {||}||||||||||||||||||||||||||||
                                  ++{sp}GlyValAspGlyLysGlnAlaArgArgT
 102586 : ........................ag{AT}GGTGTGGACGGAAAGCAAGCCCGCAGAA : 100233

    115 : hrAsnSerSerThrProLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSerCy :    133
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrAsnSerSerThrProLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSerCy
 100232 : CCAATTCCAGCACCCCGCTGGGGGAGCTTTTTGACCACGGCCTGGATAGTTGGTCATG : 100176

    134 : sValTyrPheValValThrValTyrSerIlePheGlyArgGlySerThrGlyValSer :    152
          ||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
          sValTyrPheValValThrValTyrSerIlePheGlyArgGlySerSerGlyValSer
 100175 : TGTTTACTTTGTTGTCACCGTGTATTCCATTTTTGGACGAGGATCATCTGGTGTCAGT : 100119

    153 : ValPheValLeuTyrLeuLeuLeuTrpValValLeuPheSerPheIleLeuSerHisT :    172
          |||.!!||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValLeuValLeuTyrLeuLeuLeuTrpValValLeuPheSerPheIleLeuSerHisT
 100118 : GTTCTTGTTCTTTATCTCCTGCTATgggtagttttgttttctttcatcctgTCTCACT : 100059

    173 : rpGluLysTyrAsnThrGlyIleLeuPheLeuProTrpGlyTyrAspIleSerGlnVa :    191
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rpGluLysTyrAsnThrGlyIleLeuPheLeuProTrpGlyTyrAspIleSerGlnVa
 100058 : GGGAAAAGTATAACACAGGGATTCTTTTCCTGCCATGGGGATATGACATTAGCCAGGT : 100002

    192 : l  >>>> Target Intron 5 >>>>  ThrIleSerPheValTyrIleValThrA :    201
          |            898 bp           ||||||||||||||||||||||||||||
          l++                         ++ThrIleSerPheValTyrIleValThrA
 100001 : Ggt.........................agACTATTTCTTTTGTCTACATAGTGACTG :  99074

    202 : laValValGlyValGluAlaTrpTyrGluProPheLeuPheAsnPheLeuTyrArgAs :    220
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laValValGlyValGluAlaTrpTyrGluProPheLeuPheAsnPheLeuTyrArgAs
  99073 : CGGTTGTGGGAGTTGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATATAGAGA :  99017

    221 : pLeuPheThrAlaMetIleIle{G}  >>>> Target Intron 6 >>>>  {ly} :    228
          ||||||||||||||||||||||{|}           8090 bp           {||}
          pLeuPheThrAlaMetIleIle{G}++                         ++{ly}
  99016 : CCTATTCACTGCAATGATCATT{G}gt.........................ag{GT} :  90902

    229 : CysAlaLeuCysValThrLeuProMetSerLeuLeuAsnPhePhe{Ar}  >>>> Ta :    244
          |||||||||||||||||||||||||||||||||||||||||||||{||}         
          CysAlaLeuCysValThrLeuProMetSerLeuLeuAsnPhePhe{Ar}++       
  90901 : TGTGCACTGTGTGTGACTCTTCCAATGAGTTTGTTAAATTTTTTC{AG}gt....... :  90851

    245 : rget Intron 7 >>>>  {g}SerTyrLysAsnAsnThrLeuLysLeuAsnSerVa :    256
            1964 bp           {|}||||||||||||||||||||||||! !||||||||
                            ++{g}SerTyrLysAsnAsnThrLeuLysHisAsnSerVa
  90850 : ..................ag{a}agctataaaaataaCACGTTGAAACACAATTCAGT :  88855

    257 : lTyrGluAlaMetValProLeuPheSerProCysLeuLeuPheIleLeuSerThrAla :    275
          ||||||||||:!!||||||...||||||||||||||||||||||||||||||||||||
          lTyrGluAlaValValProPhePheSerProCysLeuLeuPheIleLeuSerThrAla
  88854 : CTATGAAGCTGTGGttcccttcttttctccatgTTTGCTATTCATTTTGTCTACAGCA :  88798

    276 : TrpIleLeuTrpSerProSerAspIleLeuGluLeuHisProArgValPheTyrPheM :    295
          |||||||||  !||||||||||||||||||||||||||||||||||||||||||!!.|
          TrpIleLeuLeuSerProSerAspIleLeuGluLeuHisProArgValPheTyrLeuM
  88797 : TGGATCCTCCTGTCACCTTCAGATATTTTAGAGTTACACCCTAGAGTGTTCTACTTAA :  88738

    296 : etValGlyThrAlaPheAlaAsnSerThr  >>>> Target Intron 8 >>>>   :    305
          |||||||||||||||||||||||||||||           1194 bp           
          etValGlyThrAlaPheAlaAsnSerThr++                         ++
  88737 : TGGTTGGAACAGCCTTTGCCAACAGCAcagt.........................ag :  87516

    306 : CysGlnLeuIleValCysGlnMetSerSerThrArgCysProThrLeuAsnTrpLeuL :    324
          |||||||||||||||||||||||||||||||||!:!||||||||||||||||||||||
          CysGlnLeuIleValCysGlnMetSerSerThrGlnCysProThrLeuAsnTrpLeuL
  87515 : TGTCAGCTGATTGTTTGTCAAATGAGCAGTACCCAGTGCCCAACTTTGAATTGGTTGC :  87457

    325 : euValProLeuPheLeuValValLeuValValAsnLeuGlyValAlaSerTyrValGl :    343
          ||:!!|||||||||:!!:!!|||:!!|||||||||:!!||||||.!! !!||||||||
          euLeuProLeuPheValIleValMetValValAsnValGlyValThrProTyrValGl
  87456 : TGCTTCCTCTTTTTGTGATTGTCATGGTGGTGAATGTAGGAGTAACCCCCTATGTTGA :  87400

    344 : uSerIleLeuLeuTyrThrLeuThrThrAlaPheThrLeuAlaHisIleHisTyrGly :    362
          |||||||||||||!:!|||||||||.!!||||||||||||||||||:!!|||||||||
          uSerIleLeuLeuPheThrLeuThrAlaAlaPheThrLeuAlaHisValHisTyrGly
  87399 : GAGCATTCTCCTGTTTACGCTAACGGCTGCTTTCACTTTGGCACACGTCCACTATGGA :  87343

    363 : ValArgVal  >>>> Target Intron 9 >>>>  ValLysGlnLeuSerSerHi :    372
          |||||||||           2029 bp           |||||||||||||||!:!||
          ValArgVal++                         ++ValLysGlnLeuSerAsnHi
  87342 : GTACGAGTGgt.........................agGTAAAGCAGCTGAGCAACCA :  85284

    373 : sPheGlnIleTyrProPheSerLeuArgLysProAsnSerAspUnkLeuGlyMetGlu :    391
          ||||!!.||||||||||||||||||||||||||||||||||||   ||||||:!!|||
          sPheHisIleTyrProPheSerLeuArgLysProAsnSerAsp***LeuGlyValGlu
  85283 : TTTTCACATTTACCCCTTCTCATTGAGAAAACCAAACTCAGATTGACTAGGAGTGGAA :  85227

    392 : GluLysAsnIleGlyLeu :    397
          ||||||||||||||||||
          GluLysAsnIleGlyLeu
  85226 : GAAAAGAATATTGGCCTG :  85207

vulgar: SPP00000015_1.0 0 397 . SJYR01000634.1:subseq(374996,200000) 124300 85206 - 1924 M 19 57 5 0 2 I 0 18678 3 0 2 M 23 69 5 0 2 I 0 445 3 0 2 M 36 108 S 0 1 5 0 2 I 0 2266 3 0 2 S 1 2 M 24 72 S 0 1 5 0 2 I 0 2323 3 0 2 S 1 2 M 87 261 5 0 2 I 0 894 3 0 2 M 36 108 S 0 1 5 0 2 I 0 8086 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 1960 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1190 3 0 2 M 61 183 5 0 2 I 0 2025 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	gene	85207	124300	1924	-	.	gene_id 1 ; sequence SPP00000015_1.0 ; gene_orientation +
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	124244	124300	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	124244	124300	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	124242	124243	.	-	.	intron_id 1 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	105562	124243	.	-	.	intron_id 1
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	105562	105563	.	-	.	intron_id 0 ; splice_site "ag"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	105493	105561	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	105493	105561	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	105491	105492	.	-	.	intron_id 2 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	105044	105492	.	-	.	intron_id 2
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	105044	105045	.	-	.	intron_id 1 ; splice_site "ag"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	104935	105043	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	104935	105043	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	104933	104934	.	-	.	intron_id 3 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	102665	104934	.	-	.	intron_id 3
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	102665	102666	.	-	.	intron_id 2 ; splice_site "AG"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	102590	102664	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	102590	102664	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	102588	102589	.	-	.	intron_id 4 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	100263	102589	.	-	.	intron_id 4
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	100263	100264	.	-	.	intron_id 3 ; splice_site "AG"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	100000	100262	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	100000	100262	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	99998	99999	.	-	.	intron_id 5 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	99102	99999	.	-	.	intron_id 5
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	99102	99103	.	-	.	intron_id 4 ; splice_site "AG"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	98993	99101	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	98993	99101	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	98991	98992	.	-	.	intron_id 6 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	90903	98992	.	-	.	intron_id 6
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	90903	90904	.	-	.	intron_id 5 ; splice_site "AG"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	90854	90902	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	90854	90902	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	90852	90853	.	-	.	intron_id 7 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	88890	90853	.	-	.	intron_id 7
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	88890	88891	.	-	.	intron_id 6 ; splice_site "ag"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	88709	88889	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	88709	88889	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	88707	88708	.	-	.	intron_id 8 ; splice_site "gt"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	87515	88708	.	-	.	intron_id 8
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	87515	87516	.	-	.	intron_id 7 ; splice_site "AG"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	87332	87514	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	87332	87514	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice5	87330	87331	.	-	.	intron_id 9 ; splice_site "GT"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	intron	85303	87331	.	-	.	intron_id 9
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	splice3	85303	85304	.	-	.	intron_id 8 ; splice_site "AG"
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	cds	85207	85302	.	-	.	
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	exon	85207	85302	.	-	.	insertions 0 ; deletions 0
SJYR01000634.1:subseq(374996,200000)	exonerate:protein2genome:local	similarity	85207	124300	1924	-	.	alignment_id 1 ; Query SPP00000015_1.0 ; Align 124301 1 57 ; Align 105562 20 69 ; Align 105044 43 108 ; Align 102663 80 72 ; Align 100261 105 261 ; Align 99102 192 108 ; Align 90901 229 45 ; Align 88889 245 180 ; Align 87515 305 183 ; Align 85303 366 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
