Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137834/Desktop/SPS1.fa -t genomic_SJYR01001146.1]
Hostname: [am33122-116054u]

C4 Alignment:
------------
         Query: SPP00000032_1.0  Protein  Selenophosphate synthetase 1 (SPS1)  Homo sapiens  Complete
        Target: SJYR01001146.1:subseq(0,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold1157_size964852, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1401
   Query range: 60 -> 381
  Target range: 26371 -> 27331

    61 : MetProArgLeuGlyIleGlyMetAspThrCysValIleProLeuArgHisGlyGlyLeu :    80
         ...|||   ||||||||||||||||||:!!||||||||||||||||||||||||||||||
         PheProSerLeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeu
 26372 : ttccccagcctgggCATTGGGATGGACTCCTGCGTCATACCCCTGAGACACGGGGGCCTG : 26429

    81 : SerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspProTyrMetMetGly :   100
         |||||||||||||||||||||!:!.!!||||||:!:|||!!:||||||||||||||||||
         SerLeuValGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGly
 26430 : TCCTTGGTGCAGACCACCGACTTCTTTTACCCCCTGGTGGAAGATCCCTATATGATGGGG : 26489

   101 : ArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysAsp :   120
         |||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||
         ArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAsp
 26490 : CGCATCGCATGTGCCAACGTGCTGAGTGACCTCTACGCGATGGGCATTACTGAGTGTGAC : 26549

   121 : AsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArgGluArgAspLysVal :   140
         ||||||||||||||||||.!!||||||.!.!..||| !!!!:..!||||||!!:|||:!!
         AsnMetLeuMetLeuLeuSerValSerGlnSerMetProGluGluGluArgGluLysIle
 26550 : AACATGTTGATGCTACTCAGCGTCAGCCAGAGTATGCCTGAGGAGGAGCGAGAAAAGATA : 26609

   141 : MetProLeuIleIleGlnGlyPheLysAspAlaAlaGluGluAlaGlyThrSerValThr :   160
         !  ||||||!!:|||:!!||||||::!|||||||||||||||!.!||||||:!!||||||
         ThrProLeuMetIleLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValThr
 26610 : ACACCACTCATGATCAAAGGCTTTCGGGATGCTGCCGAGGAAGGAGGGACTGCAGTGACT : 26669

   161 : GlyGlyGlnThrValLeuAsnProTrpIleValLeuGlyGlyValAlaThrThrValCys :   180
         |||||||||||||||:!!||||||||||||:!!:!!|||||||||||||||..!||||||
         GlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrValValCys
 26670 : GGTGGGCAAACGGTGGTAAACCCTTGGATTATCATTGGTGGAGTTGCTACTGTAGTATGT : 26729

   181 : GlnProAsnGluPheIleMetProAspAsnAlaValProGlyAspValLeuValLeuThr :   200
         ||||||||||||||||||:!!||||||!:!||||||  !|||||||||||||||||||||
         GlnProAsnGluPheIleLeuProAspSerAlaValValGlyAspValLeuValLeuThr
 26730 : CAACCAAATGAATTCATCTTGCCTGACAGCGCCGTTGTTGGGGATGTGCTCGTGTTAACT : 26789

   201 : LysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIleProGluLys :   220
         |||||||||||||||||||||||||||  !!.!|||||||||||||||! !||||||::!
         LysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArg
 26790 : AAACCCTTAGGAACCCAGGTTGCCGTCAATGCCCACCAATGGCTGGATAATCCTGAACGA : 26849

   221 : TrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeuAlaTyrGlnGluAla :   240
         |||||||||||||||:!!||||||:!!::!|||!!:|||||||||!.!||||||||||||
         TrpAsnLysIleLysMetValValSerArgGluGluValGluLeuGlyTyrGlnGluAla
 26850 : TGGAATAAGATAAAGATGGTGGTTTCCAGAGAAGAGGTAGAGCTGGGTTATCAGGAAGCC : 26909

   241 : MetMetAsnMetAlaArgLeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAla :   260
         |||.!.|||||||||! !|||||||||! !||||||||||||||||||||||||||||||
         MetPheAsnMetAlaThrLeuAsnArgIleAlaAlaGlyLeuMetHisThrPheAsnAla
 26910 : ATGTTCAACATGGCTACCCTCAATAGAATTGCTGCTGGGCTGATGCACACGTTTAATGCC : 26969

   261 : HisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAsnLeuAlaLys :   280
         ||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||||
         HisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLys
 26970 : CACGCAGCCACAGATATCACCGGCTTTGGCATTCTGGGTCACTCTCAGAACCTtgcaaaa : 27029

   281 : GlnGlnArgAsnGluValSerPheValIleHisAsnLeuProValLeuAlaLysMetAla :   300
         ||||||||||||||||||||||||||||||||||||||||||:!!:!!||||||||||||
         GlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIleIleAlaLysMetAla
 27030 : caacaaagaaatgagGTCTCCTTTGTCATTCATAATCTGCCCATCATTGCCAAGATGGCT : 27089

   301 : AlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCysProGluThr :   320
         |||:!!||||||||| !!|||..!   |||||||||:!!!!.||||||!   !!||||||
         AlaIleSerLysAlaSerGlyArg---PheGlyLeuLeuGlnGlyThrSerAlaGluThr
 27090 : GCCATCAGCAAGGCCAGCGGGCGC---TTCGGTCTCCTGCAAGGAACCTCAGCAGAAACT : 27146

   321 : SerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysAlaGluIle :   340
         |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||
         SerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysSerGluIle
 27147 : TCTGGGGGGCTACTGATTTGTCTGCCAAGAGAACAGGCAGCTCGCTTTTGTTCGGAAATC : 27206

   341 : LysSerProLysTyrGlyGluGlyHisGlnAlaTrpIleIleGlyIleValGluLysGly :   360
         |||||| !!||||||||||||||||||||||||||||||:!!||||||||||||||||||
         LysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleValGlyIleValGluLysGly
 27207 : AAATCTTCAAAGTATGGAGAGGGTCATCAAGCCTGGATCGTCGGTATTGTGGAAAAGGGA : 27266

   361 : AsnArgThrAlaArgIleIleAspLysProArgIleIleGluValAlaProGlnValAla :   380
         |||||||||||||||||||||||||||||||||:!!|||||||||  !|||!::! !|||
         AsnArgThrAlaArgIleIleAspLysProArgValIleGluValLeuProArgGlyAla
 27267 : AACCGGACAGCCCGGATCATTGACAAGCCTCGCGTCATTGAGGTCCTACCTCGTGGGGCC : 27326

   381 : Thr :   381
         |||
         Thr
 27327 : ACT : 27331

vulgar: SPP00000032_1.0 60 381 . SJYR01001146.1:subseq(0,200000) 26371 27331 + 1401 M 248 744 G 1 0 M 72 216
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	gene	26372	27331	1401	+	.	gene_id 1 ; sequence SPP00000032_1.0 ; gene_orientation .
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	cds	26372	27331	.	+	.	
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	exon	26372	27331	.	+	.	insertions 0 ; deletions 1
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	similarity	26372	27331	1401	+	.	alignment_id 1 ; Query SPP00000032_1.0 ; Align 26372 61 744 ; Align 27116 310 216
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000032_1.0  Protein  Selenophosphate synthetase 1 (SPS1)  Homo sapiens  Complete
        Target: SJYR01001146.1:subseq(0,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold1157_size964852, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 105
   Query range: 0 -> 45
  Target range: 26131 -> 26266

     1 : MetSerThrArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgLeu :    20
         .!.|||!:!  !..! !!|||.!.|||:!!:!!!  !  |||..!  !|||!::||||||
         PheSerSerTyrArgProPheGluProGlnAlaLeuGlyLeuSerProSerTrpArgLeu
 26132 : TTCTCGAGCTACCGGCCCTTCGAGCCCCAGGCGTTGGGTCTCAGCCCGAGCTGGCGGCTC : 26189

    21 : ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys :    40
         ||| !!|||:!!!  :!!||||||  !||||||||||||||||||!!:..!|||!  |||
         ThrGlyPheSerGlyMetLysGly***GlyCysLysValProGlnGluThrLeuLeuLys
 26190 : ACCGGCTTCTCTGGCATGAAGGGCTGAGGCTGCAAGGTCCCCCAGGAGACGCTGCTCAAG : 26249

    41 : LeuLeuGluSerLeu :    45
         ||||||! !.!!|||
         LeuLeuAlaGlyLeu
 26250 : CTCCTGGCGGGACTG : 26266

vulgar: SPP00000032_1.0 0 45 . SJYR01001146.1:subseq(0,200000) 26131 26266 + 105 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	gene	26132	26266	105	+	.	gene_id 2 ; sequence SPP00000032_1.0 ; gene_orientation .
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	cds	26132	26266	.	+	.	
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	exon	26132	26266	.	+	.	insertions 0 ; deletions 0
SJYR01001146.1:subseq(0,200000)	exonerate:protein2genome:local	similarity	26132	26266	105	+	.	alignment_id 2 ; Query SPP00000032_1.0 ; Align 26132 1 135
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
