Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137834/Desktop/GPx6_cow.fa -t genomic_SJYR01000174.1]
Hostname: [am30715-101078u]

C4 Alignment:
------------
         Query: SPP00000243_2.0  Protein  Glutathione peroxidase 6 (GPx6)  Cow 
        Target: SJYR01000174.1:subseq(420826,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold176_size1437069, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1146
   Query range: 0 -> 221
  Target range: 93441 -> 100218

      1 : MetIleLeuGlnLeuTrpAlaSerCysLeuPheProLeuPheLeuValGlyLeuAlaG :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||.!!|||||||
          MetIleLeuGlnLeuTrpAlaSerCysLeuPheProLeuPheLeuValSerLeuAlaG
  93442 : ATGATCCTGCAGCTCTGGGCCTCCTGTCTTTTCCCACTGTTCCTGGTCAGCTTAGCTC :  93499

     21 : lnLeuThrProLysGlnGlnGlnMetLys  >>>> Target Intron 1 >>>>   :     30
          |||||||||||||||||||||||||||||           2342 bp           
          lnLeuThrProLysGlnGlnGlnMetLys++                         ++
  93500 : AGCTGACTCCGAAGCAGCAACAGATGAAGgt.........................ag :  95869

     31 : ValAspCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuA :     49
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValAspCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuA
  95870 : GTGGATTGCTATAAGGGGGTAACAGGCACCATCTATGAGTATGGAGCTCTCACCCTCA :  95928

     50 : snGlyGluGluTyrIleGlnPheLysGlnTyrValGlyLysHisValLeuPheValAs :     68
          ||||||||||||||||||||||||||||||||!.!|||||||||||||||||||||||
          snGlyGluGluTyrIleGlnPheLysGlnTyrAlaGlyLysHisValLeuPheValAs
  95929 : ATGGTGAGGAGTATATCCAGTTCAAGCAGTATGCGGGCAAGCATGTCCTGTTTGTTAA :  95985

     69 : nValAlaThrTyrUnkGlyLeuThrAlaGlnTyrPro{G}  >>>> Target Intr :     81
          |||||||||||||   |||||||||||||||||||||{|}           1835 bp
          nValAlaThrTyr***GlyLeuThrAlaGlnTyrPro{G}++                
  95986 : TGTGGCCACCTATTGAGGCTTGACAGCTCAGTATCCA{G}gt................ :  96027

     82 : on 2 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyValValV :     96
                     {||}|||||||||||||||||||||||||||||||||||||||||||
                   ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyValValV
  96028 : .........ag{AA}CTGAATGCACTACAGGAGGAGCTGAAGCCTTTCGGTGTAGTTG :  97904

     97 : alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProAlaLysAsnSerGluIl :    115
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProAlaLysAsnSerGluIl
  97905 : TGTTGGGCTTTCCCTGCAACCAATTTGGAAAACAAGAGCCAGCAAAGAACTCAGAGAT :  97961

    116 : eLeuMetGlyLeu{Ly}  >>>> Target Intron 3 >>>>  {s}TyrValArg :    123
          |||||||||||||{||}           1168 bp           {|}|||||||||
          eLeuMetGlyLeu{Ly}++                         ++{s}TyrValArg
  97962 : CCTTATGGGGCTC{AA}gt.........................ag{G}TATGTACGT :  99153

    124 : ProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyG :    143
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyG
  99154 : CCAGGTGGTGGCTTTGTTCCCAATTTTCAGCTCTTTGAGAAAGGGGATGTGaatggag :  99213

    144 : luLysGluGlnLysValPheThrPheLeuLys  >>>> Target Intron 4 >>> :    154
          ||||||||||||||||||||||||||||||||            769 bp        
          luLysGluGlnLysValPheThrPheLeuLys++                        
  99214 : aaaaagaacagaaggtCTTTACCTTCCTGAAGgt........................ :  99248

    155 : >  AsnAlaCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheTrpG :    172
             |||:!!|||||||||||||||||||||||||||||||||||||||||||||||||
           ++AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheTrpG
  99249 : .agAACTCCTGCCCTCCAACCTCTGATCTTTTGGGCTCATCAAGTCAGCTCTTCTGGG : 100069

    173 : luProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs :    191
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          luProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs
 100070 : AGCCCATGAAGGTCCATGACATTCGCTGGAACTTTGAGAAGTTTCTAGTGGGGCCTGA : 100126

    192 : pGlyValProValMetArgTrpTyrHisArgAlaSerValSerThrValLysSerAsp :    210
          ||||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||
          pGlyIleProValMetArgTrpTyrHisArgAlaSerValSerThrValLysSerAsp
 100127 : TGGCATCCCTGTCATGCGTTGGTACCACCGGGCTTCAGTCAGCACAGTTAAATCAGAC : 100183

    211 : MetLeuGluTyrLeuLysGlnPheLysSerGlu :    221
          |||||||||||||||||||||||||||||||||
          MetLeuGluTyrLeuLysGlnPheLysSerGlu
 100184 : ATGCTGGAGTACCTGAAGCAGTTCAAAAGCGAA : 100218

vulgar: SPP00000243_2.0 0 221 . SJYR01000174.1:subseq(420826,200000) 93441 100218 + 1146 M 29 87 5 0 2 I 0 2338 3 0 2 M 51 153 S 0 1 5 0 2 I 0 1831 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 1164 3 0 2 S 1 1 M 33 99 5 0 2 I 0 765 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	gene	93442	100218	1146	+	.	gene_id 1 ; sequence SPP00000243_2.0 ; gene_orientation +
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	93442	93528	.	+	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	93442	93528	.	+	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice5	93529	93530	.	+	.	intron_id 1 ; splice_site "GT"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	intron	93529	95870	.	+	.	intron_id 1
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice3	95869	95870	.	+	.	intron_id 0 ; splice_site "ag"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	95871	96024	.	+	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	95871	96024	.	+	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice5	96025	96026	.	+	.	intron_id 2 ; splice_site "GT"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	intron	96025	97859	.	+	.	intron_id 2
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice3	97858	97859	.	+	.	intron_id 1 ; splice_site "AG"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	97860	97977	.	+	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	97860	97977	.	+	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice5	97978	97979	.	+	.	intron_id 3 ; splice_site "GT"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	intron	97978	99145	.	+	.	intron_id 3
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice3	99144	99145	.	+	.	intron_id 2 ; splice_site "AG"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	99146	99245	.	+	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	99146	99245	.	+	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice5	99246	99247	.	+	.	intron_id 4 ; splice_site "GT"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	intron	99246	100014	.	+	.	intron_id 4
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice3	100013	100014	.	+	.	intron_id 3 ; splice_site "AG"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	100015	100218	.	+	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	100015	100218	.	+	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	similarity	93442	100218	1146	+	.	alignment_id 1 ; Query SPP00000243_2.0 ; Align 93442 1 87 ; Align 95871 30 153 ; Align 97862 82 114 ; Align 99147 121 99 ; Align 100015 154 204
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000243_2.0  Protein  Glutathione peroxidase 6 (GPx6)  Cow 
        Target: SJYR01000174.1:subseq(420826,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold176_size1437069, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 825
   Query range: 27 -> 221
  Target range: 72673 -> 67393

    28 : MetLysValAspCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThr :    47
         ...::::!!||||||||||||! !|||! !||||||||||||!!:|||! !|||!!!|||
         PheGlnMetAspCysTyrLysAspValLysGlyThrIleTyrAspTyrAspAlaPheThr
 72673 : ttccagATGGATTGCTACAAAGATGTGAAAGGCACCATCTATGATTATGACGCTTTCACT : 72616

    48 : LeuAsnGlyGluGluTyrIleGlnPheLysGlnTyrValGlyLysHisValLeuPheVal :    67
         |||||||||:!!|||:!!||||||||||||||||||!.!|||||||||||||||||||||
         LeuAsnGlyLysGluHisIleGlnPheLysGlnTyrAlaGlyLysHisValLeuPheVal
 72615 : CTTAATGGAAAGGAACACATTCAGTTCAAGCAGTATGCGGGCAAACATGTCCTTTTTGTC : 72556

    68 : AsnValAlaThrTyrUnkGlyLeuThrAlaGlnTyrPro{G}  >>>> Target Intr :    81
         |||||||||||||||   |||||||||||||||||||||{|}           3127 bp
         AsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++                
 72555 : AATGTGGCCACCTATTGTGGTCTGACAGCTCAATATCCT{G}gt................ : 72511

    82 : on 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyValValVal :    96
                    {||}|||||||||||||||||||||||||||||| !!|||:!!||||||
                  ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProValGlyLeuValVal
 72510 : .........ag{AA}CTGAATGCACTACAGGAGGAGCTGAAGCCTGTTGGCCTAGTTGTG : 69342

    97 : LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProAlaLysAsnSerGluIleLeu :   116
         |||||||||||||||||||||||||||||||||||||||!.!:!!|||||||||||||||
         LeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeu
 69341 : TTGGGATTTCCCTGTAACCAATTCGGGAAGCAAGAACCAGGAGAAAACTCAGAAATCCTT : 69282

   117 : MetGlyLeu{Ly}  >>>> Target Intron 2 >>>>  {s}TyrValArgProGly :   125
            ||||||{||}            476 bp           {|}|||||||||||||||
         ProGlyLeu{Ly}++                         ++{s}TyrValArgProGly
 69281 : CCAGGACTG{AA}gt.........................ag{G}TATGTCCGTCCAGGA : 68779

   126 : GlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGlu :   145
         ||||||!:!|||||||||||||||||||||||||||||||||||||||||||||! !|||
         GlyGlyTyrValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluThrGlu
 68778 : GGAGGATACGTACCTAATTTCCAGCTGTTTGAGAAAGGGGATGTGAACGGTGAAACAGAG : 68719

   146 : GlnLysValPheThrPheLeuLys  >>>> Target Intron 3 >>>>  AsnAlaC :   156
         ||||||||||||||||||||||||           1095 bp           .!.:!!|
         GlnLysValPheThrPheLeuLys++                         ++GlnSerC
 68718 : CAGAAAGTCTTCACCTTCTTAAAGgt.........................agCAATCCT : 67591

   157 : ysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheTrpGluProMetLysV :   176
         |||||! ! !!|||!!:!!!:!!||||||! !!.!!!.:!!! !|||||||||!!:! !|
         ysProHisProSerGluPheMetGlySerIleLysHisIleSerTrpGluProIleMetV
 67590 : GTCCTCACCCTTCTGAGTTTATGGGCTCAATCAAACATATATCCTGGGAACCCATCATGG : 67531

   177 : alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValM :   196
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValProValM
 67530 : TCCATGACATCCGCTGGAATTTTGAAAAGTTCCTGGTGGGACCTGATGGCGTCCCTGTCA : 67471

   197 : etArgTrpTyrHisArgAlaSerValSerThrValLysSerAspMetLeuGluTyrLeuL :   216
         ||||||||!:!||||||.!! !!||||||! !||||||||||||!!:|||! !|||:!!|
         etArgTrpPheHisArgThrProValSerIleValLysSerAspIleLeuAlaTyrMetL
 67470 : TGCGCTGGTTTCATCGGACTCCAGTCAGTATAGTCAAGTCAGATATTCTGGCATACATGA : 67411

   217 : ysGlnPheLysSerGlu :   221
         |||||||||||!!!:!!
         ysGlnPheLysThrLys
 67410 : AACAGTTCAAAACCAAA : 67394

vulgar: SPP00000243_2.0 27 221 . SJYR01000174.1:subseq(420826,200000) 72673 67393 - 825 M 53 159 S 0 1 5 0 2 I 0 3123 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1091 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	gene	67394	72673	825	-	.	gene_id 1 ; sequence SPP00000243_2.0 ; gene_orientation +
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	72514	72673	.	-	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	72514	72673	.	-	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice5	72512	72513	.	-	.	intron_id 1 ; splice_site "GT"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	intron	69387	72513	.	-	.	intron_id 1
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice3	69387	69388	.	-	.	intron_id 0 ; splice_site "AG"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	69269	69386	.	-	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	69269	69386	.	-	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice5	69267	69268	.	-	.	intron_id 2 ; splice_site "GT"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	intron	68793	69268	.	-	.	intron_id 2
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice3	68793	68794	.	-	.	intron_id 1 ; splice_site "AG"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	68693	68792	.	-	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	68693	68792	.	-	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice5	68691	68692	.	-	.	intron_id 3 ; splice_site "GT"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	intron	67598	68692	.	-	.	intron_id 3
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	splice3	67598	67599	.	-	.	intron_id 2 ; splice_site "AG"
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	cds	67394	67597	.	-	.	
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	exon	67394	67597	.	-	.	insertions 0 ; deletions 0
SJYR01000174.1:subseq(420826,200000)	exonerate:protein2genome:local	similarity	67394	72673	825	-	.	alignment_id 1 ; Query SPP00000243_2.0 ; Align 72674 28 159 ; Align 69385 82 114 ; Align 68792 121 99 ; Align 67598 154 204
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
