Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/GPx4.fa -t genomic_SJYR01000970.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000007_1.0  Protein  Glutathione peroxidase 4 (GPx4)  Homo sapiens  Complete
        Target: SJYR01000970.1:subseq(1199488,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold974_size1932807, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 962
   Query range: 0 -> 196
  Target range: 98775 -> 100848

      1 : MetSerLeuGlyArgLeuCysArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuA :     20
          ||||||!!!.!!||||||! !|||||||||||||||||||||||||||||||||||||
          MetSerPheSerArgLeuTyrArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuA
  98776 : ATGAGCTTTAGCCGTCTGTACCGCCTGCTCAAGCCAGCGCTACTCTGCGGGGCTCTGG :  98833

     21 : laAlaProGlyLeuAlaGlyThrMet  >>>> Target Intron 1 >>>>  Cys :     29
          |||||||||||||||||.!!||||||            970 bp           |||
          laAlaProGlyLeuAlaSerThrMet++                         ++Cys
  98834 : CTGCGCCAGGCCTGGCCAGCACCATGgt.........................agTGC :  99830

     30 : AlaSerArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspI :     49
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaSerArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspI
  99831 : GCGTCCCGCGACGACTGGCGCTGTGCTCGCTCCATGCACGAATTCTCAGCCAAGGACA :  99890

     50 : leAspGlyHisMetValAsnLeuAspLysTyr{Ar}  >>>> Target Intron 2 :     60
          ||||||||!.!|||||||||||||||||||||{||}            77 bp     
          leAspGlyArgMetValAsnLeuAspLysTyr{Ar}++                    
  99891 : TCGACGGGCGCATGGTTAACCTGGACAAGTAC{CG}gt.................... :  99927

     61 :  >>>>  {g}GlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThr :     76
                 {|}|||  !||||||||||||||||||||||||||||||   |||||||||
               ++{g}GlyHisValCysIleValThrAsnValAlaSerGln***GlyLysThr
  99928 : .....ag{G}GGCCACGTGTGCATCGTCACCAATGTGGCCTCGCAATGAGGCAAGACT : 100048

     77 : GluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuA :     96
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuA
 100049 : GAGGTAAACTACACTCAGCTGGTCGACCTGCACGCCCGATACGCCGAGTGTGGTTTAC : 100108

     97 : rgIleLeuAlaPheProCysAsnGlnPheGlyLysGln  >>>> Target Intron :    109
          ||||||||||||||||||||||||||||||||!:!|||            120 bp  
          rgIleLeuAlaPheProCysAsnGlnPheGlyArgGln++                  
 100109 : GGATCCTGGCCTTCCCTTGCAACCAGTTTGGGAGGCAGgt.................. : 100149

    110 :  3 >>>>  GluProGlySerAsnGluGluIleLysGluPheAlaAlaGlyTyrAsnV :    125
                   |||||||||||||||! !|||||||||||||||||||||||||||||||
                 ++GluProGlySerAsnAlaGluIleLysGluPheAlaAlaGlyTyrAsnV
 100150 : .......agGAGCCAGGGAGTAATGCGGAGATCAAAGAGTTCGCCGCTGGCTATAACG : 100315

    126 : alLysPheAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTr :    144
          |||||||||||:!!||||||||||||||||||||||||||||||||||||||||||||
          alLysPheAspLeuPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTr
 100316 : TCAAATTCGATTTGTTCAGCAAGATCTGTGTAAATGGGGACGACGCCCACCCTCTGTG : 100372

    145 : pLysTrpMetLysIleGlnProLysGlyLysGlyIleLeuGly{As}  >>>> Targ :    159
          |||||||||||||:!!||||||||||||!:!|||!!:||||||{||}           
          pLysTrpMetLysValGlnProLysGlyArgGlyMetLeuGly{As}++         
 100373 : GAAATGGATGAAAGTCCAGCCCAAGGGGAGGGGCATGTTGGGA{AA}gt......... : 100421

    160 : et Intron 4 >>>>  {n}AlaIleLysTrpAsnPheThrLys  >>>> Target :    168
           107 bp           {|}||||||||||||||||||||||||            1
                          ++{n}AlaIleLysTrpAsnPheThrLys++           
 100422 : ................ag{C}GCCATCAAATGGAACTTCACCAAGgt........... : 100553

    169 :  Intron 5 >>>>  PheLeuIleAspLysAsnGlyCysValValLysArgTyrGly :    181
          39 bp           ||||||||||||||||||||||||||||||||||||||||||
                        ++PheLeuIleAspLysAsnGlyCysValValLysArgTyrGly
 100554 : ..............agTTCCTCATTGACAAGAACGGCTGTGTGGTGAAGCGGTATGGT : 100729

    182 : ProMetGluGluProLeu  >>>> Target Intron 6 >>>>  ValIleGluLy :    191
          ||||||||||||||||||            72 bp            |||||||||||
          ProMetGluGluProLeu++                         ++ValIleGluLy
 100730 : CCCATGGAAGAGCCCCTGgt.........................agGTGATAGAGAA : 100831

    192 : sAspLeuProHisTyr :    196
          ||||||||||  !|||
          sAspLeuProCysTyr
 100832 : GGATCTGCCGTGCTAC : 100848

vulgar: SPP00000007_1.0 0 196 . SJYR01000970.1:subseq(1199488,200000) 98775 100848 + 962 M 28 84 5 0 2 I 0 966 3 0 2 M 31 93 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 48 144 5 0 2 I 0 116 3 0 2 M 50 150 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 8 24 5 0 2 I 0 135 3 0 2 M 20 60 5 0 2 I 0 68 3 0 2 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	gene	98776	100848	962	+	.	gene_id 1 ; sequence SPP00000007_1.0 ; gene_orientation +
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	cds	98776	98859	.	+	.	
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	exon	98776	98859	.	+	.	insertions 0 ; deletions 0
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice5	98860	98861	.	+	.	intron_id 1 ; splice_site "GT"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	intron	98860	99829	.	+	.	intron_id 1
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice3	99828	99829	.	+	.	intron_id 0 ; splice_site "AG"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	cds	99830	99924	.	+	.	
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	exon	99830	99924	.	+	.	insertions 0 ; deletions 0
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice5	99925	99926	.	+	.	intron_id 2 ; splice_site "GT"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	intron	99925	100001	.	+	.	intron_id 2
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice3	100000	100001	.	+	.	intron_id 1 ; splice_site "AG"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	cds	100002	100146	.	+	.	
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	exon	100002	100146	.	+	.	insertions 0 ; deletions 0
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice5	100147	100148	.	+	.	intron_id 3 ; splice_site "GT"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	intron	100147	100266	.	+	.	intron_id 3
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice3	100265	100266	.	+	.	intron_id 2 ; splice_site "AG"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	cds	100267	100418	.	+	.	
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	exon	100267	100418	.	+	.	insertions 0 ; deletions 0
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice5	100419	100420	.	+	.	intron_id 4 ; splice_site "GT"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	intron	100419	100525	.	+	.	intron_id 4
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice3	100524	100525	.	+	.	intron_id 3 ; splice_site "AG"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	cds	100526	100550	.	+	.	
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	exon	100526	100550	.	+	.	insertions 0 ; deletions 0
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice5	100551	100552	.	+	.	intron_id 5 ; splice_site "GT"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	intron	100551	100689	.	+	.	intron_id 5
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice3	100688	100689	.	+	.	intron_id 4 ; splice_site "AG"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	cds	100690	100749	.	+	.	
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	exon	100690	100749	.	+	.	insertions 0 ; deletions 0
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice5	100750	100751	.	+	.	intron_id 6 ; splice_site "GT"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	intron	100750	100821	.	+	.	intron_id 6
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	splice3	100820	100821	.	+	.	intron_id 5 ; splice_site "AG"
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	cds	100822	100848	.	+	.	
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	exon	100822	100848	.	+	.	insertions 0 ; deletions 0
SJYR01000970.1:subseq(1199488,200000)	exonerate:protein2genome:local	similarity	98776	100848	962	+	.	alignment_id 1 ; Query SPP00000007_1.0 ; Align 98776 1 84 ; Align 99830 29 93 ; Align 100003 61 144 ; Align 100267 109 150 ; Align 100527 160 24 ; Align 100690 168 60 ; Align 100822 188 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
