_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-60
 Query name: gi|390195574|gb|AFL70013.1| glutathione peroxidase isoform 4, partial [Bubalus bubalis]
 Query range: 18-151  (total 151)

 Target: /data/www-rg/seblastian_results/371900215/tempfiles/temptarget.fasta
 Chromosome: SJYR01000970.1:subseq_1299488,100000_ Strand: +
 Positions:
 -Exon 1  3            146
 -Exon 2  267          418
 -Exon 3  526          550
 -Exon 4  690          749
 -Exon 5  822          842

 Redox box: no

Query   GHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ <---Intron---> EPGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLW
        ||||||||||||||||/||||||||||||||||||||||||||||||| <   120bp    > ||||||||||||||||||||||||||||||||||||
Target  GHVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGRQ                EPGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLW
        gcgtagaaggtctgaaggataccggccgctggtgtcacgtctactgac                gcgaaggaagtgggtagatgttaaatgaggggccct
        gatgttcatccaggacataacattatacgacaggtgttctcgaatgga                acggacataatccgaatatattgatgtagaacactg
        ccgcccctgcgaacgtgacctggccgccaccgttagcgcctccgtggg                gagttggcagcctctccactgccgctatgcccctgg
                    *                                                                                       

Query   KWMKVQPKGRGMLGN <---Intron---> AIKWNFTK <---Intron---> FLIDKNGCVVKRYGPMEEPL <---Intron---> VIEKDLP
        ||||||||||||||| <   107bp    > |||||||| <   139bp    > |||||||||||||||||||| <    72bp    > |||||||
Target  KWMKVQPKGRGMLGN                AIKWNFTK                FLIDKNGCVVKRYGPMEEPL                VIEKDLP
        ataagccagagatga                gaatataa                tcagaagtggactgcaggcc                gagagcc
        agtatacagggttga                ctagatca                tttaaaggttagagctaact                ttaaatc
        aggacgcgggcgga                cccagcccg                cctcgcctggggttcgagcg                gaggtgg
                                                                                                          
 Sequence until next stop: 
TGCTACCTCTAG
 C  Y  L  * 

 Distance CDS-SECIS: 63 ; UGA-SECIS: 426

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJYR01000970.1:subseq_1299488,100000_ Strand = + Positions = 906 - 978
 Found by:  Infernal (score=30.94) Covels (score=36.91)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -14.04

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({({((((......([[{((((((((({(.....-.........)})))))))))}]])----...))))})})..
 target  CUUCCCCCGGUGCCUAUGAUGGUCUGUCUGAAAACC-AGCCCCUGGUGGGGCAGACCUGAG----AACCUGGCGUGCA
                         ****           ^^^                       ****