Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/DI3.fa -t genomic_SJYR01002697.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000003_1.0  Protein  Iodothyronine deiodinase 3 (DI3)  Homo sapiens  Complete
        Target: SJYR01002697.1:subseq(4221,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold2709_size263146, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1401
   Query range: 0 -> 278
  Target range: 100833 -> 99999

      1 : MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysL :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysL
 100833 : ATGCTGCGCTCCCTGCTGCTTCACTCCCTGCGGCTCTGCGCCCAGACGGCCTCGTGCC : 100776

     21 : euValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLe :     39
          ||!.!|||||||||||||||||||||||||||.!!|||||||||||||||||||||||
          euAlaLeuPheProArgPheLeuGlyThrAlaLeuMetLeuTrpLeuLeuAspPheLe
 100775 : TCGCGCTCTTCCCGCGCTTCCTGGGCACGGCCCTCATGCTCTGGCTGCTAGACTTCCT : 100719

     40 : uCysIleArgLysHisPheLeuGlyArgArgArgArgGlyGlnProGluProGluVal :     58
          ||||||||||||||||||||||||||||||||||||||||!:!||||||  !||||||
          uCysIleArgLysHisPheLeuGlyArgArgArgArgGlyArgProGluIleGluVal
 100718 : GTGCATCCGCAAGCACTTCCTGGGCCGTCGACGCCGGGGTCGGCCGGAAATCGAAGTG : 100662

     59 : GluLeuAsnSerGluGlyGluGluValProProAspAspProProIleCysValSerA :     78
          ||||||||||||!!:||||||||||||||||||||||||||||||:!!||||||||||
          GluLeuAsnSerAspGlyGluGluValProProAspAspProProValCysValSerA
 100661 : GAGCTCAACAGCGACGGCGAAGAGGTGCCCCCCGACGACCCGCCCGTCTGCGTGTCCG : 100602

     79 : spAspAsnArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLe :     97
          ||||||||||||||||||||||||||||||||!:!|||||||||||||||||||||||
          spAspAsnArgLeuCysThrLeuAlaSerLeuArgAlaValTrpHisGlyGlnLysLe
 100601 : ACGACAACCGCCTGTGCACTTTGGCGTCGCTGAGGGCCGTCTGGCACGGCCAGAAGTT : 100545

     98 : uAspPhePheLysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeu :    116
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uAspPhePheLysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeu
 100544 : GGATTTCTTCAAGCAGGCGCATGAAGGCGGGCCGGCGCCCAACTCTGAAGTGGTCCTG : 100488

    117 : ProAspGlyPheGlnSerGlnHisIleLeuAspTyrAlaGlnGlyAsnArgProLeuV :    136
          |||||||||||||||!:!!:!||||||||||||||||||!:!||||||||||||||||
          ProAspGlyPheGlnAsnArgHisIleLeuAspTyrAlaArgGlyAsnArgProLeuV
 100487 : CCCGACGGCTTCCAGAACCGGCACATCCTCGACTACGCCCGAGGAAACCGCCCGCTGG : 100428

    137 : alLeuAsnPheGlySerCysThrUnkProProPheMetAlaArgMetSerAlaPheGl :    155
          |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
          alLeuAsnPheGlySerCysThr***ProProPheMetAlaArgMetSerAlaPheGl
 100427 : TGCTCAACTTCGGCAGCTGCACCTGACCACCGTTCATGGCGCGCATGAGCGCCTTCCA : 100371

    156 : nArgLeuValThrLysTyrGlnArgAspValAspPheLeuIleIleTyrIleGluGlu :    174
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nArgLeuValThrLysTyrGlnArgAspValAspPheLeuIleIleTyrIleGluGlu
 100370 : GCGCCTGGTCACCAAGTATCAGCGCGACGTCGACTTCCTCATCATCTACATCGAGGAA : 100314

    175 : AlaHisProSerAspGlyTrpValThrThrAspSerProTyrIleIleProGlnHisA :    194
          ||||||||||||||||||||||||||||||||||||||||||! !|||||||||||||
          AlaHisProSerAspGlyTrpValThrThrAspSerProTyrSerIleProGlnHisA
 100313 : GCGCACCCTTCCGACGGCTGGGTCACCACGGACTCTCCCTACAGCATCCCGCAGCACC : 100254

    195 : rgSerLeuGluAspArgValSerAlaAlaArgValLeuGlnGlnGlyAlaProGlyCy :    213
          |||||||||||||||||||||||||||||||||||||||||||||||||||||! !||
          rgSerLeuGluAspArgValSerAlaAlaArgValLeuGlnGlnGlyAlaProGluCy
 100253 : GAAGCCTGGAGGACCGCGTCAGCGCCGCGCGCGTGCTGCAGCAAGGGGCTCCGGAATG : 100197

    214 : sAlaLeuValLeuAspThrMetAlaAsnSerSerSerSerAlaTyrGlyAlaTyrPhe :    232
          ||||||||||||||||||||||.!!|||||||||||||||||||||||||||||||||
          sAlaLeuValLeuAspThrMetThrAsnSerSerSerSerAlaTyrGlyAlaTyrPhe
 100196 : CGCGCTCGTGCTCGACACGATGACCAACTCCAGCAGTTCGGCTTACGGCGCCTACTTC : 100140

    233 : GluArgLeuTyrValIleGlnSerGlyThrIleMetTyrGlnGlyGlyArgGlyProA :    252
          ||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||
          GluArgLeuTyrIleIleGlnSerGlyThrIleMetTyrGlnGlyGlyArgGlyProA
 100139 : GAGCGCCTCTACATCATCCAGAGTGGCACCATTATGTACCAGGGCGGCCGCGGCCCCG : 100080

    253 : spGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArgTyrAspGluGlnLeuHi :    271
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArgTyrAspGluGlnLeuHi
 100079 : ACGGCTACCAGGTCTCCGAGCTGCGCACCTGGCTGGAGCGCTATGATGAGCAGCTGCA : 100023

    272 : sGlyAlaArgProArgArgVal :    278
          |||| !!!:!||||||||||||
          sGlyProGlnProArgArgVal
 100022 : CGGCCCGCAGCCCCGTCGAGTG : 100000

vulgar: SPP00000003_1.0 0 278 . SJYR01002697.1:subseq(4221,200000) 100833 99999 - 1401 M 278 834
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01002697.1:subseq(4221,200000)	exonerate:protein2genome:local	gene	100000	100833	1401	-	.	gene_id 1 ; sequence SPP00000003_1.0 ; gene_orientation .
SJYR01002697.1:subseq(4221,200000)	exonerate:protein2genome:local	cds	100000	100833	.	-	.	
SJYR01002697.1:subseq(4221,200000)	exonerate:protein2genome:local	exon	100000	100833	.	-	.	insertions 0 ; deletions 0
SJYR01002697.1:subseq(4221,200000)	exonerate:protein2genome:local	similarity	100000	100833	1401	-	.	alignment_id 1 ; Query SPP00000003_1.0 ; Align 100834 1 834
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
