Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/DI2.fa -t genomic_SJYR01000770.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000002_1.0  Protein  Iodothyronine deiodinase 2 (DI2)  Homo sapiens  Complete
        Target: SJYR01000770.1:subseq(643517,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold748_size1164022, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1267
   Query range: 0 -> 265
  Target range: 91125 -> 100581

      1 : MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheS :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheS
  91126 : ATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAAATTCTGCCAGTTTTTTTCT :  91183

     21 : erAsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erAsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLe
  91184 : CCAACTGCCTCTTCCTGGCGCTCTATGACTCGGTCATTCTCCTCAAGCACGTGGTGCT :  91240

     40 : uLeuLeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGlu :     58
          |||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||
          uLeuLeuSerArgSerLysSerThrArgGlyGlnTrpArgArgMetLeuThrSerGlu
  91241 : GCTGCTGAGCCGCTCCAAGTCCACTCGCGGGCAGTGGAGGCGCATGCTGACCTCAGAA :  91297

     59 : GlyLeuArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln  >>>> Tar :     75
          |||:!!||||||:!!|||||||||||||||||||||||||||||||||          
          GlyMetArgCysIleTrpLysSerPheLeuLeuAspAlaTyrLysGln++        
  91298 : GGAATGCGCTGCATCTGGAAAAGCTTCCTCCTCGACGCCTACAAACAGgt........ :  91350

     76 : get Intron 1 >>>>  ValLysLeuGlyGluAspAlaProAsnSerSerValVal :     87
           8661 bp           |||||||||||||||||||||||||||||| !!||||||
                           ++ValLysLeuGlyGluAspAlaProAsnSerArgValVal
  91351 : .................agGTGAAACTGGGTGAAGATGCCCCCAATTCCCGCGTGGTG : 100045

     88 : HisValSerSerThrGluGlyGlyAspAsnSerGlyAsnGlyThrGlnGluLysIleA :    107
          ! !||||||||| !!||||||||||||! !||||||||||||.!!|||||||||! !|
          ProValSerSerProGluGlyGlyAspIleSerGlyAsnGlyAlaGlnGluLysThrA
 100046 : CCTGTCTCCAGTCCGGAAGGAGGTGACATCAGTGGAAATGGTGCCCAGGAGAAAACAG : 100105

    108 : laGluGlyAlaThrCysHisLeuLeuAspPheAlaSerProGluArgProLeuValVa :    126
          ||!!:|||::!  !|||||||||||||||||||||!:!||||||||||||||||||||
          laAspGlySerGluCysHisLeuLeuAspPheAlaAsnProGluArgProLeuValVa
 100106 : CAGATGGAAGTGAATGCCACCTTCTGGACTTTGCCAACCCTGAGCGCCCACTGGTGGT : 100162

    127 : lAsnPheGlySerAlaThrUnkProProPheThrSerGlnLeuProAlaPheArgLys :    145
          |||||||||||||||||||   ||||||||||||!:!|||||||||||||||!!!|||
          lAsnPheGlySerAlaThr***ProProPheThrAsnGlnLeuProAlaPheSerLys
 100163 : CAACTTCGGCTCGGCCACTTGACCTCCTTTCACTAACCAGCTGCCAGCCTTCAGCAAA : 100219

    146 : LeuValGluGluPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaH :    165
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuValGluGluPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaH
 100220 : CTGGTGGAAGAGTTCTCATCCGTGGCTGACTTCCTGTTGGTCTACATTGATGAGGCTC : 100279

    166 : isProSerAspGlyTrpAlaIleProGlyAspSerSerLeuSerPheGluValLysLy :    184
          ||||||||||||||||||||:!:||||||||||||||||||   ||||||||||||||
          isProSerAspGlyTrpAlaValProGlyAspSerSerLeuPhePheGluValLysLy
 100280 : ATCCTTCAGATGGTTGGGCGGTGCCTGGggattcttctttgtttttcgaGGTGAAGAA : 100336

    185 : sHisGlnAsnGlnGluAspArgCysAlaAlaAlaGlnGlnLeuLeuGluArgPheSer :    203
          ||||!:!|||||||||||||||||||||||||||||||||||||||||||||||||||
          sHisArgAsnGlnGluAspArgCysAlaAlaAlaGlnGlnLeuLeuGluArgPheSer
 100337 : GCACCGGAACCAGGAAGACCGATGCGCAGCAGCCCAGCAGCTCCTGGAGCGTTTCTCC : 100393

    204 : LeuProProGlnCysArgValValAlaAspArgMetAspAsnAsnAlaAsnIleAlaT :    223
          |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||
          LeuProProGlnCysArgValValAlaAspArgMetAspAsnAsnAlaAsnValAlaT
 100394 : TTGCCGCCCCAGTGCCGAGTTGTGGCTGACCGCATGGACAATAATGCCAATGTCGCTT : 100453

    224 : yrGlyValAlaPheGluArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGl :    242
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yrGlyValAlaPheGluArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGl
 100454 : ATGGGGTAGCCTTTGAACGTGTGTGCATTGTGCAGAGACAGAAAATTGCTTATCTGGG : 100510

    243 : yGlyLysGlyProPheSerTyrAsnLeuGlnGluValArgHisTrpLeuGluLysAsn :    261
          ||||||||||||||||! !|||||||||||||||||||||!.!|||||||||||||||
          yGlyLysGlyProPhePheTyrAsnLeuGlnGluValArgArgTrpLeuGluLysAsn
 100511 : AGGAAAGGGTCCCTTCTTTTACAACCTGCAAGAAGTCCGGCGTTGGCTGGAGAAGAAT : 100567

    262 : PheSerLysArg :    265
          ||||||||||||
          PheSerLysArg
 100568 : TTCAGCAAGAGA : 100581

vulgar: SPP00000002_1.0 0 265 . SJYR01000770.1:subseq(643517,200000) 91125 100581 + 1267 M 74 222 5 0 2 I 0 8657 3 0 2 M 191 573
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	gene	91126	100581	1267	+	.	gene_id 1 ; sequence SPP00000002_1.0 ; gene_orientation +
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	cds	91126	91347	.	+	.	
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	exon	91126	91347	.	+	.	insertions 0 ; deletions 0
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	splice5	91348	91349	.	+	.	intron_id 1 ; splice_site "GT"
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	intron	91348	100008	.	+	.	intron_id 1
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	splice3	100007	100008	.	+	.	intron_id 0 ; splice_site "AG"
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	cds	100009	100581	.	+	.	
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	exon	100009	100581	.	+	.	insertions 0 ; deletions 0
SJYR01000770.1:subseq(643517,200000)	exonerate:protein2genome:local	similarity	91126	100581	1267	+	.	alignment_id 1 ; Query SPP00000002_1.0 ; Align 91126 1 222 ; Align 100009 75 573
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
