------- SECIS element -- id:1 -- grade:A ---- Chromosome = PVKD010002365.1:subseq_1,87996_ Strand = - Positions = 87039 - 86972 Found by: Infernal (score=29.51) Covels (score=22.87) Stem2 length = 10 Apical loop length = 9 Insertion in stem2 = 0, 0 Free Energy = -14.62 ..(((((((.......(((((((((((((((...............)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ..((((({(---....([[{((((((((((......--------...))))))))))}]])......-...)}))))).. target UUGGAAGCA---UUUAUGAUGGUGCAUGGCCAAACU--------UAAGCUAUGUACCUGAAACCACA-GUUUUCUUCUCC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = PVKD010002365.1:subseq_1,87996_ Strand = - Positions = 5246 - 5171 Found by: Infernal (score=11.67) Covels (score=9.94) Stem2 length = 9 Apical loop length = 19 Insertion in stem2 = 0, 0 Free Energy = -13.21 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..((((((((......{[[((([((((((.-..................))))))])))]]}..--...)))))))).. target AAUAGACUGGGCAUGGUGAUACAUGCCUUU-AAUCCCAGCACUCAGGCUAAGGCAGGUGGAUCU--CUGUUAGUUUGAG **** ^^ ****