------- SECIS element -- id:1 -- grade:A ----
 Chromosome = PVKD010004213.1:subseq_1,120000_ Strand = - Positions = 52444 - 52370
 Found by:  Infernal (score=24.64) Covels (score=26.15)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -19.17

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({(((((--....{[[((((((({(((..................)))})))))))]]}..--...)))))}))).
 target  CACUGGUGUG--CGAAUGAUAACUACUGACGAAAGAGUCACCCGCUCAGUCUGUGGUUGGAUGU--AGUCACACGAGUC
                         ****           ^^^                        ****                 

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = PVKD010004213.1:subseq_1,120000_ Strand = - Positions = 44771 - 44694
 Found by:  Infernal (score=13.17) Covels (score=7.3)
 Stem2 length = 7   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -12.66

         ..(((((((.........(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({((((.........{[[((({{(((((.......---.........)))))}})))]]}......-...))))}))))
 target  AUCAAGUAUUCAAAUACAUGAACUUAUGUGGAGCAGUC---AUAUUCAAGCCACACCAGUGAUACUACC-GUCAUGCAUGGU
                           ****                                     ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = PVKD010004213.1:subseq_1,120000_ Strand = - Positions = 41228 - 41158
 Found by:  Infernal (score=11.43) Covels (score=0.85)
 Stem2 length = 8   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -4.49

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({(((((((......([[(((-(({((((......-..........))))})).)))]])----..-)))))))}).
 target  CCUGGCAAGGUGCUCUUGAAGA-ACUCAUACCAACU-GGAAUGGAGAUGUGUGUCUCUGAA----CC-UUUUGUCUGC
                         ****            ^^                       ****