_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-22
 Query name: gi|170671714|ref|NP_001116250.1| thioredoxin reductase 3 [Canis lupus familiaris]
 Query range: 227-586  (total 586)

 Target: /data/www-rg/seblastian_results/212798643/tempfiles/temptarget.fasta
 Chromosome: PISW01007477.1 Strand: -
 Positions:
 -Exon 1  34597        34718
 -Exon 2  33605        33830
 -Exon 3  32342        32434
 -Exon 4  25925        26001
 -Exon 5  25189        25345
 -Exon 6  21114        21221
 -Exon 7  9430         9525
 -Exon 8  6980         7114
 -Exon 9  6701         6766

 Redox box: no

Query   IKATNRKGQETCYTAAKFVLATGQRPRYLGIQGDKEYCITS <---Intron---> DDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTIMVRSI
         /||||||||||/||||||/|||/||||||| ||||||||| <   766bp    > |||||||||||||||||||||||||||||/|/|||||/|||||
Target  FQATNRKGQETCHTAAKFVIATGERPRYLGIPGDKEYCITS                DDLFSLPYCPGKTLVVGASYVALECAGFLSGLGLDVTVMVRSI
        tcgaaaagcgatcaggatgagaggaccttgacggagttaaa                ggcttccttcgaatggggttggcgtggtctgcgtggagagcta
        taccagagaacgacccatttccgagcgatgtcgaaaagtcg                aattctcagcgactttgccatctagcgttcgtgtatctttgct
        cgaccaaagatctttagtcaaacagagcaacaatagcttt                tcctttgttcttaaaggtattttgatgatcccccatcgtggcac
                                                                                                            

Query   LLRGFDQEMAEKVGSYMEQHGVKFLRKFVPVL <---Intron---> VQQLEKGSPGKLKVVAKSTEGPETIEEIYNT <---Intron---> VLLAI
        |||||||||||/||||||||||||||||/||  <   1170bp   > |/|||||||||||||||||||||||| |||| <   6340bp   > |||||
Target  LLRGFDQEMAERVGSYMEQHGVKFLRKFIPVT                VKQLEKGSPGKLKVVAKSTEGPETIEGIYNT                VLLAI
        cccgtgcgaggaggttagccggattaatacga                gactgagtcgacagggataggcgaaggataa                gttga
        ttggtaaatcagtgcataaagtattgattctc                taataagccgatattcaccagcactagtaac                tttct
        tttcttaagagagtccggatttgcaaatatgg                tagggagatgggaggtaccagaattaaacta                tgaac
                                                                                                            

Query   GRDSCTRKIGLEKIGVKINEK <---Intron---> SGKIPVNDVEQTNVPYVYAVGDILEGKLELTPVAIQAGKLLARRLFAGRLEK <---Intron
        ||||||||/||||||||/||| <   579bp    > |||||||||||||||||||||||||||||| |||||||/||||||| ||||| <   3967bp
Target  GRDSCTRKMGLEKIGVKVNEK                SGKIPVNDVEQTNVPYVYAVGDILEGKLELAPVAIQAGRLLARRLFGGRLEK           
        gcgttaaaagtgaaggagaga                agaacgagggcaagctgtggggacggacgcgcggacggaccgcactggctga           
        ggacgcgatgtaatgtataaa                ggatctaataacatcatactgattagatatcctctacggttcggttgggtaa           
        ttcttagagcgggttcaccg                gtcaaaactgagctgcctttggttggtatgcattcagccggttaattgctgag           
                                                                                                            

Query   ---> CDYVNVPTTVFTPLEYGCCGLSEEKAIEMYKKENLE <---Intron---> VYHTLFWPLEWTVAGRDNNTCYAKIICNKLDN <---Intron
           > ||||||||||||||||||||||||||||||||//|| <  11588bp   > ||||||||||||||||||||||||||||| || <   2315bp
Target       CDYVNVPTTVFTPLEYGCCGLSEEKAIEMYKKDHLE                VYHTLFWPLEWTVAGRDNNTCYAKIICNKFDN           
             tgtgagcaagtaccgtgttgctggagagataagccg                gtcatttccgtagggagaaattgaaataatga           
             gaatatcccttcctaaggggtcaaactataaaaata                taacttgctagctcggaaacgacattgaataa           
             ttccttgtcgtctgaccctgacaagttagtaattca                gcccgcgtcggagtcgccttccggatctgcct           
                                                                                                            

Query   ---> YRVIGFHVLGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE <---Intron---> VFTTLEITKSSGLDITQKGCUG
           > ||||||||||||||||||||||||||||||||||/|||||||||| <   213bp    > ||||||||||||||||||||||
Target       YRVIGFHVLGPNAGEVTQGFAAAMKCGLTKQLLDNTIGIHPTCGE                VFTTLEITKSSGLDITQKGCUG
             tcgagtcgcgcaggggacgtgggaatgcaacccgaaagaccatgg                gtaatgaaattgcgaacagttg
             agttgtattgcacgatcagtccctaggtcaattaactgtaccgga                ttcctatcaccgtatcaagggg
             tggaactttagtatgccaatgaagatgccagactcctattcattg                gtatgaccgagaacctgaccac
                                                                                              * 
 Sequence until next stop: 
TAG
 *