_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-05
 Query name: gi|373432689|ref|NP_001243286.1| thioredoxin reductase 1, cytoplasmic [Monodelphis domestica]
 Query range: 1-499  (total 499)

 Target: /data/www-rg/seblastian_results/907510313/tempfiles/temptarget.fasta
 Chromosome: PISW01000907.1:subseq_364270,88348_ Strand: -
 Positions:
 -Exon 1  59970        60056
 -Exon 2  57521        57593
 -Exon 3  55021        55140
 -Exon 4  51792        51934
 -Exon 5  51305        51417
 -Exon 6  50012        50237
 -Exon 7  45709        45801
 -Exon 8  44426        44502
 -Exon 9  42748        42904
 -Exon 10 39256        39363
 -Exon 11 36815        36910
 -Exon 12 33213        33347
 -Exon 13 24361        24426

 Redox box: no

Query   MNGSEEPPEAYDYDLIIIGGGSGGLAAAK <---Intron---> EAARYGKKILVLDFVTPTPLGNRWG <---Intron---> LGGTCVNVGCIPKK
        |||||/ ||/||||||||||||||||||| <   2376bp   > |||/| ||||||||||||| | ||| <   2380bp   > ||||||||||||||
Target  MNGSEDLPESYDYDLIIIGGGSGGLAAAK                EAAKYNKKILVLDFVTPTPRGTRWG                LGGTCVNVGCIPKK
        aagtggccgttgtgcaaagggtggcggga                gggataaaacgcgtgacaccgaatg                cggatgaggtacaa
        tagcaatcacaaaattttgggcggtccca                accaaaaattttattccccggcgg                gtggcgtatggtcaa
        gtcggttcgctctcccccacccaagagtg                gacaccggagcgttctacctatag                tcaactgcgtcataa
                                                                                                            

Query   LMHQAALLGQALQDSRKYGWQLSEEV <---Intron---> KHNWESMTEAVQNYIGSLNWGYRVALRENRVTYENAYGEFVGPHKIK <---Intron
        |||||||||||/|||| |||// | | <   3086bp   > ||/|/ ||||||||||||||||||/||| /||||||||/|||||/|| <   374bp 
Target  LMHQAALLGQAVQDSRNYGWKIEESV                KHDWDKMTEAVQNYIGSLNWGYRVSLREKKVTYENAYGQFVGPHRIK           
        caccggttgcggcgtcatgtaaggtg                acgtgaaagggcatagtcatgtcgtccgaagatgagtgctggccaaa           
        ttaaccttgactaacgaaggataac                taaagaatcactaaatgctaggagtctgaaatcaaacagattgcagta           
        ggcgatgaaacgactacccggcgga                taccgtagaatggtccccgcgccgctgggaacctgtgtagtatttgtg           
                                                                                                            

Query   ---> ATNNKGKEKFYTAERFLIATGERPRYPGIPGDKEYCISS <---Intron---> DDLFSLSYCPGKTLVVGASYVALECAGFLAGIGLDVTVMV
           > || //|/|| |||||||||||||||| |||||||/|||| <   1067bp   > |||||| |||||||||||||||||||||||||||||||||
Target       AT-SRGREKVYTAERFLIATGERPRYLGIPGDKEFCISS                DDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMV
             ga-aagagagtaggatcagaggaccttgacggagttaaa                ggctttcttcgaacggggttggtgtggtcggagtggagag
             cc-ggggaataccagtttccgagcgatgtcgaaatgtgg                aattctcagcgactttgccatctagcgttcgtgtatcttt
             aa-tacaaattgagatctggcggagtgcctccagcccc                ttttccattcttgcggcagctccggttatttcttatcttga
                                                                                                            

Query   RSILLRGFDQDMANKIGEHMEDHGIKFIKKFVPIK <---Intron---> IEQIKEGTPGTLRVVAQSTDGKETIEGEYNT <---Intron---> VL
        |||||||||||||||||/|||/|||||||/||||| <   4210bp   > /|||/ |||| |||||||| |/||||||||| <   1206bp   > ||
Target  RSILLRGFDQDMANKIGDHMEEHGIKFIKQFVPIK                VEQIEAGTPGRLRVVAQSTSGEETIEGEYNT                VL
        ctaccagtgcgagaaaggcaggcgaataactgcaa                ggcagggacgccagggctaagggaagggtaa                gt
        gctttggtaaatcaatgaataaagtattaattcta                taatacgccggtgttcaccggaactagaaac                tt
        actctaatcgcgccattctggatacgtaagtaaaa                taacaagcacatggctgccttgaccaagctg                ag
                                                                                                            

Query   LAIGRDSCTRKIGLETVGVKINEK <---Intron---> TGKIPVNDEEQTNVPYIYAIGDVLEDKLELTPVAIQAGRLLARRLYAGSTIK <---Int
        ||||||/||| ||||||||||||| <   1521bp   >  ||||| |||||/|||||||||/|| ||||||||||||||||/|||||||/| <   338
Target  LAIGRDACTRNIGLETVGVKINEK                NGKIPVTDEEQTSVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYAGSTVK        
        cgagaggtaaaagtgagggaaaga                agaacgagggcaagctatgaggacggacgcacggacggaccgcactggtaga        
        tctggacgcgatgtactgtataaa                agatctcaaaacgtcatactgattagatatcctctacggttcagtacgccta        
        ggaaattcaattcaacggagata                gtaaatcataggccgttctcccttggggcgccgagcgagaggtggcttccccg        
                                                                                                            

Query   ron---> CDYDNVPTTVFTPLEYGACGLSEERAVEKFGEENIE <---Intron---> VYHSYFWPLEWTIPSRDNNKCYAKVICHVRDN <---Int
        4bp   > |||/|||||||||||||/||||||/||||||||||| <   2345bp   > ||||||||||||||||||||||||/||///|| <   346
Target          CDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENIE                VYHSYFWPLEWTIPSRDNNKCYAKIICNIKDN        
                tgtgagcaagtactgtgttgctggagggatgggaag                gtcatttctgtaactagaaattgaaataaaga        
                gaaaatcccttcctaagcggtcaaactaatgaaata                taagatgctagctccgaaaagacattgataaa        
                tctattactgtttggtctttttggatgggcgaactg                tcctctgggaggtaaatctgttaaacttcacc        
                                                                                                            

Query   ron---> ERVVGFHVLGPNAGEVTQGFAAALKCGLTKNQLDSTIGIHPVCAE <---Intron---> VFTTLSVTKRSGGSILQAGCUG
        7bp   > |||||||||||||||||||||||||||||| ||| |||||||||| <   8786bp   > ||||||||||||||||||||||
Target          ERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDGTIGIHPVCAE                VFTTLSVTKRSGGSILQAGCUG
                gcgggtcgcgcaggggacgtgggcatgcaacccggaagaccgtgg                gtaattgaactggaaccggttg
                agttgtattgcacgatcagtccctaggtcaaatagctgtactgca                ttcctctcagcgggttacgggg
                attccctagtatcagtgactctgcgcggcggggctccgcccctag                acgtgggcgctgacccgcccat
                                                                                                 * 
 Sequence until next stop: 
TAA
 *