_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:2 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 4e-58 Query name: gi|961725478|ref|XP_014923053.1| PREDICTED: selenoprotein P isoform X1 [Acinonyx jubatus] Query range: 1-391 (total 391) Target: /data/www-rg/seblastian_results/850631797/tempfiles/temptarget.fasta Chromosome: PISW01002351.1:subseq_156401,100000_ Strand: - Positions: -Exon 1 55895 56097 -Exon 2 54337 54549 -Exon 3 52674 52791 -Exon 4 49979 50605 Redox box: YES Query MWKSLGLALALCLLPWGRTESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRVKLEQAGYLNI ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| < 1345bp > |||||||||| ||||/ Target MWKSLGLALALCLLPWGSTESQGQSSFCKQPPPWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR LEDLRVKLEQQGYLNV ataacgcgcgctccctgaagacgcatttacccctaaagcacacatagtgagggcccgattctaccgta tggccgacgccgttag tgagtgtctctgttcgggcagagagctgaacccggtgaaacttacggctcttcttacggatgttaccg taatgtataaagatat ggacggtcgtcttcagacagcgaaccttggtgcgcagtatagacattagcgttttaccacgcccgac agacgaaaggaaatgtc * Query SYVVVNHQGLSSRLKYMHLKNKVSEHIPVYQQEENETDVWTLLNGKKDDFFVYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKIAYC |||||||||||||||| |||||||||||||||/||/|||||||/| |||| /||| < 1545bp > |||||||||||||||||||||||||| || Target SYVVVNHQGLSSRLKYTHLKNKVSEHIPVYQQDENQTDVWTLLSGNKDDFLIYDR CGRLVYHLGLPYSFLTFPYVEEAIKIVYC ttgggaccgcttctataccaaagtgcacgtccggacaggtactagaaggttatga tgccgtccgtctttcatctggggaaagtt catttaaagtccgtaacataaatcaatctaaaaaaacatgcttggaaaatttaag gggttaatgtcacttctcataactattag tttttttaacttaaatgttatataatttttaatacaatcgtcatgcatccaatc atctcactttgtcccatcgtaaactgttct Query EKKCGNCSLM <---Intron---> TPEDEDFCKIVSSATVGNTTEAPQPHHHHD-HHHHHHHHNHEHGHQHHGNGELAENQQPETPDVPGHPPSQVPH | |||||||| < 2068bp > | |/||||| |||| ||||||||||| ||||||||| |||||||||||| |||||| | |||||| Target EDKCGNCSLM TLENEDFCKTVSSA----TTEAPQPHHHHHRHHHHHHHHNREHGHQHHGNGELPENQQPEAPHATEQLPSQVPH ggatgattca acgaggttaagttg----aaggcccccccccccccccccacgcgccccgaggccgacccggccgagccctcgcc aaaggagctt ctaaaatgactccc----ccaccacaaaaagaaaaaaaaagaagaaaagagatcaaaacaccaccaatccatca acatacctcg agatacctacatat----atgtggatccccccccttcttttgtgtgctgctgtagcgaaaaatttggctcactt Query NHHKHKDHQRQGHPEDUDMPAGSESLQLSVPPKKLURKGCINQLHCKLPKDSELAPSSUCUHURHLIFEKTGSAITUQCKENLPSLCSUQGLWAEENVIE / ||| |||| ||||||||||| ||| | | |/||||||||||| |/||||||| ||||||||||||||||||||||||/|||||||||||||||||||| Target HQHKHVDHQRHGHPEDUDMPAGGESLHLPV-PQKLURKGCINQLRCQLPKDSELTPSSUCUHURHLIFEKTGSAITUQCRENLPSLCSUQGLWAEENVIE cccacggccacgccggtgacggggatcccg-ccactcagtaactctctcagtgtacaatttctcccatgaagtgaatctagacctttatcgctgggagag aaaaataaagagacaagatccggagtatct-caatggaggtaatggatcaacatccgggggaggatttaacgcctcgaggaatcctgggagtgcaaatta cgcgcgccaacctagcatgaaatatacttc-aagcaagatatgaccagcatagattccacacagtgataaagtaccaataaccctatcagacgaggccta * * * * * * * Query SUQURLPPAAUHAIQQPKPTEASTNUSUENKAKMUKUPSY ||||||||||||| || ||||||| |||/| |/||||||| Target SUQURLPPAAUHASQQLKPTEASTIUSUKNTAQMUKUPSY ttctctccggtcgacccacaggaaatataaagcatatctt cgaggtccccgacgaataccacgctgggaaccatgagcca cagatgtaccatatggcgcggccctacaatacagaaatac * * * * * * * Sequence until next stop: TAA * _________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:2 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 4e-58 Query name: gi|961725478|ref|XP_014923053.1| PREDICTED: selenoprotein P isoform X1 [Acinonyx jubatus] Query range: 1-391 (total 391) Target: /data/www-rg/seblastian_results/850631797/tempfiles/temptarget.fasta Chromosome: PISW01002351.1:subseq_156401,100000_ Strand: - Positions: -Exon 1 55895 56097 -Exon 2 54337 54549 -Exon 3 52674 52791 -Exon 4 49979 50605 Redox box: YES Query MWKSLGLALALCLLPWGRTESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRVKLEQAGYLNI ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| < 1345bp > |||||||||| ||||/ Target MWKSLGLALALCLLPWGSTESQGQSSFCKQPPPWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR LEDLRVKLEQQGYLNV ataacgcgcgctccctgaagacgcatttacccctaaagcacacatagtgagggcccgattctaccgta tggccgacgccgttag tgagtgtctctgttcgggcagagagctgaacccggtgaaacttacggctcttcttacggatgttaccg taatgtataaagatat ggacggtcgtcttcagacagcgaaccttggtgcgcagtatagacattagcgttttaccacgcccgac agacgaaaggaaatgtc * Query SYVVVNHQGLSSRLKYMHLKNKVSEHIPVYQQEENETDVWTLLNGKKDDFFVYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKIAYC |||||||||||||||| |||||||||||||||/||/|||||||/| |||| /||| < 1545bp > |||||||||||||||||||||||||| || Target SYVVVNHQGLSSRLKYTHLKNKVSEHIPVYQQDENQTDVWTLLSGNKDDFLIYDR CGRLVYHLGLPYSFLTFPYVEEAIKIVYC ttgggaccgcttctataccaaagtgcacgtccggacaggtactagaaggttatga tgccgtccgtctttcatctggggaaagtt catttaaagtccgtaacataaatcaatctaaaaaaacatgcttggaaaatttaag gggttaatgtcacttctcataactattag tttttttaacttaaatgttatataatttttaatacaatcgtcatgcatccaatc atctcactttgtcccatcgtaaactgttct Query EKKCGNCSLM <---Intron---> TPEDEDFCKIVSSATVGNTTEAPQPHHHHD-HHHHHHHHNHEHGHQHHGNGELAENQQPETPDVPGHPPSQVPH | |||||||| < 2068bp > | |/||||| |||| ||||||||||| ||||||||| |||||||||||| |||||| | |||||| Target EDKCGNCSLM TLENEDFCKTVSSA----TTEAPQPHHHHHRHHHHHHHHNREHGHQHHGNGELPENQQPEAPHATEQLPSQVPH ggatgattca acgaggttaagttg----aaggcccccccccccccccccacgcgccccgaggccgacccggccgagccctcgcc aaaggagctt ctaaaatgactccc----ccaccacaaaaagaaaaaaaaagaagaaaagagatcaaaacaccaccaatccatca acatacctcg agatacctacatat----atgtggatccccccccttcttttgtgtgctgctgtagcgaaaaatttggctcactt Query NHHKHKDHQRQGHPEDUDMPAGSESLQLSVPPKKLURKGCINQLHCKLPKDSELAPSSUCUHURHLIFEKTGSAITUQCKENLPSLCSUQGLWAEENVIE / ||| |||| ||||||||||| ||| | | |/||||||||||| |/||||||| ||||||||||||||||||||||||/|||||||||||||||||||| Target HQHKHVDHQRHGHPEDUDMPAGGESLHLPV-PQKLURKGCINQLRCQLPKDSELTPSSUCUHURHLIFEKTGSAITUQCRENLPSLCSUQGLWAEENVIE cccacggccacgccggtgacggggatcccg-ccactcagtaactctctcagtgtacaatttctcccatgaagtgaatctagacctttatcgctgggagag aaaaataaagagacaagatccggagtatct-caatggaggtaatggatcaacatccgggggaggatttaacgcctcgaggaatcctgggagtgcaaatta cgcgcgccaacctagcatgaaatatacttc-aagcaagatatgaccagcatagattccacacagtgataaagtaccaataaccctatcagacgaggccta * * * * * * * Query SUQURLPPAAUHAIQQPKPTEASTNUSUENKAKMUKUPSY ||||||||||||| || ||||||| |||/| |/||||||| Target SUQURLPPAAUHASQQLKPTEASTIUSUKNTAQMUKUPSY ttctctccggtcgacccacaggaaatataaagcatatctt cgaggtccccgacgaataccacgctgggaaccatgagcca cagatgtaccatatggcgcggccctacaatacagaaatac * * * * * * * Sequence until next stop: TAA * _________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:2 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 4e-58 Query name: gi|961725478|ref|XP_014923053.1| PREDICTED: selenoprotein P isoform X1 [Acinonyx jubatus] Query range: 1-391 (total 391) Target: /data/www-rg/seblastian_results/850631797/tempfiles/temptarget.fasta Chromosome: PISW01002351.1:subseq_156401,100000_ Strand: - Positions: -Exon 1 55895 56097 -Exon 2 54337 54549 -Exon 3 52674 52791 -Exon 4 49979 50605 Redox box: YES Query MWKSLGLALALCLLPWGRTESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRVKLEQAGYLNI ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| < 1345bp > |||||||||| ||||/ Target MWKSLGLALALCLLPWGSTESQGQSSFCKQPPPWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR LEDLRVKLEQQGYLNV ataacgcgcgctccctgaagacgcatttacccctaaagcacacatagtgagggcccgattctaccgta tggccgacgccgttag tgagtgtctctgttcgggcagagagctgaacccggtgaaacttacggctcttcttacggatgttaccg taatgtataaagatat ggacggtcgtcttcagacagcgaaccttggtgcgcagtatagacattagcgttttaccacgcccgac agacgaaaggaaatgtc * Query SYVVVNHQGLSSRLKYMHLKNKVSEHIPVYQQEENETDVWTLLNGKKDDFFVYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKIAYC |||||||||||||||| |||||||||||||||/||/|||||||/| |||| /||| < 1545bp > |||||||||||||||||||||||||| || Target SYVVVNHQGLSSRLKYTHLKNKVSEHIPVYQQDENQTDVWTLLSGNKDDFLIYDR CGRLVYHLGLPYSFLTFPYVEEAIKIVYC ttgggaccgcttctataccaaagtgcacgtccggacaggtactagaaggttatga tgccgtccgtctttcatctggggaaagtt catttaaagtccgtaacataaatcaatctaaaaaaacatgcttggaaaatttaag gggttaatgtcacttctcataactattag tttttttaacttaaatgttatataatttttaatacaatcgtcatgcatccaatc atctcactttgtcccatcgtaaactgttct Query EKKCGNCSLM <---Intron---> TPEDEDFCKIVSSATVGNTTEAPQPHHHHD-HHHHHHHHNHEHGHQHHGNGELAENQQPETPDVPGHPPSQVPH | |||||||| < 2068bp > | |/||||| |||| ||||||||||| ||||||||| |||||||||||| |||||| | |||||| Target EDKCGNCSLM TLENEDFCKTVSSA----TTEAPQPHHHHHRHHHHHHHHNREHGHQHHGNGELPENQQPEAPHATEQLPSQVPH ggatgattca acgaggttaagttg----aaggcccccccccccccccccacgcgccccgaggccgacccggccgagccctcgcc aaaggagctt ctaaaatgactccc----ccaccacaaaaagaaaaaaaaagaagaaaagagatcaaaacaccaccaatccatca acatacctcg agatacctacatat----atgtggatccccccccttcttttgtgtgctgctgtagcgaaaaatttggctcactt Query NHHKHKDHQRQGHPEDUDMPAGSESLQLSVPPKKLURKGCINQLHCKLPKDSELAPSSUCUHURHLIFEKTGSAITUQCKENLPSLCSUQGLWAEENVIE / ||| |||| ||||||||||| ||| | | |/||||||||||| |/||||||| ||||||||||||||||||||||||/|||||||||||||||||||| Target HQHKHVDHQRHGHPEDUDMPAGGESLHLPV-PQKLURKGCINQLRCQLPKDSELTPSSUCUHURHLIFEKTGSAITUQCRENLPSLCSUQGLWAEENVIE cccacggccacgccggtgacggggatcccg-ccactcagtaactctctcagtgtacaatttctcccatgaagtgaatctagacctttatcgctgggagag aaaaataaagagacaagatccggagtatct-caatggaggtaatggatcaacatccgggggaggatttaacgcctcgaggaatcctgggagtgcaaatta cgcgcgccaacctagcatgaaatatacttc-aagcaagatatgaccagcatagattccacacagtgataaagtaccaataaccctatcagacgaggccta * * * * * * * Query SUQURLPPAAUHAIQQPKPTEASTNUSUENKAKMUKUPSY ||||||||||||| || ||||||| |||/| |/||||||| Target SUQURLPPAAUHASQQLKPTEASTIUSUKNTAQMUKUPSY ttctctccggtcgacccacaggaaatataaagcatatctt cgaggtccccgacgaataccacgctgggaaccatgagcca cagatgtaccatatggcgcggccctacaatacagaaatac * * * * * * * Sequence until next stop: TAA *