------- SECIS element -- id:1 -- grade:B ----
 Chromosome = PISW01002351.1:subseq_156401,100000_ Strand = - Positions = 49270 - 49205
 Found by:  Infernal (score=28.5) Covels (score=12.37)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -13.1

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---....([[{(((({(.((((......--.-----...)))))}))))}]])..--..-.))))))...
 target  UUUCCAUAG---UCAAUGAUGGUUCAGUAGGUAAACU--A-----CGUCCUAUAAACCUGAACU--UC-UCUAUGGUUA
                         ****            ^^^                       ****                 

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = PISW01002351.1:subseq_156401,100000_ Strand = - Positions = 49723 - 49641
 Found by:  Infernal (score=24.7) Covels (score=29.91)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -13.04

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..(((((((..........{[[{((((((((([(.....-.........)])))))))))}]]}........-...)))))))..
 target  AGCAUUCUACUUGCAUUAAUGAGAACAGAGGCAUAAACU-AUGACCUAGGGGUUUCUGUUGGAUAGUUAGCA-AUUUAGAAUGGA
                            ****           ^^^                       ****                     

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = PISW01002351.1:subseq_156401,100000_ Strand = + Positions = 30834 - 30906
 Found by:  Infernal (score=18.11) Covels (score=21.79)
 Stem2 length = 11   Apical loop length = 8   Insertion in stem2 = 1, 0
 Free Energy = -9.94

         ..(((((((.......((((((((((.(((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (({({[(((.......{[[{(({(((.((((((.......-----.)))))))))}))}]]}.....-.-.)))]})}))
 target  GGAAAAGUUAUAUCCAUGAUGGAGUUUUCUCUAAAUUUGC-----AUGGAGGAACACCUGAUAUUUA-G-GAAUGCUCCC
                         ****             ^^                       ****