________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 3e-59 Query name: gi|1034142209|ref|XP_016794961.1| PREDICTED: selenoprotein O isoform X1 [Pan troglodytes] Query range: 1-694 (total 694) Target: /data/www-rg/seblastian_results/346644482/tempfiles/temptarget.fasta Chromosome: PISW01003802.1:subseq_59027,100000_ Strand: - Positions: -Exon 1 63445 64025 -Exon 2 57781 57984 -Exon 3 56265 56445 -Exon 4 55200 55330 -Exon 5 54595 54875 -Exon 6 51462 51612 -Exon 7 50507 50692 -Exon 8 50244 50415 -Exon 9 50000 50191 Redox box: YES Query MAAHRAALGASLAAARL--LPL-SRCSPSPAPRSTLS-GAAMEPAPRWLAGLRFDNRALRALPVETPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLV ||| |||| | || ||/ || | |/| | / ||||||||||||||||||||||||||||||||||||||||| ||||||/||/| |||||||| Target MAALRAALRALLAEARVRSRPLGQRPPPAPCSASAAARGAAMEPAPRWLAGLRFDNRALRALPVETPPPGPEGAPSAPRSVPGACFSRVRPVPLRQPRLV aggcaggcagccgggcgctcccgcccccgcttgtgggcgggagcgcctcggcctgacgccgccggacccgcgggctgcctgcggttacgccgcccccccg tcctgcctgcttcacgtgcgctgagcccccgccccccggcctacccggtcgtgtaagctgctctaccccgcagcccccgctcgcgtggtgctctgacgtt gctcgcgcatgcgactccggcgcgcggcgcccttccaccccggggccgggggccccccgcggcgggggcccgcggcggccgggcccccggcgggcggccg Query ALSEPALALLGLGAPP----AREA-EAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFSR <---I |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| < 5 Target ALSEPALALLGLGAPPADAAAREAREAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR gctgcgcgccgcggccgggggcggcgggggcttagagcccgggcggctttgcctgctggccgggggatcgggtaggggctgcccagggcactta ctcacctcttgtgccccacccgacgacacctttggacttcgcacccagaggaatgatcgatgagcctatgatgcccgaggatatagcgccctcg ggggcgggggcgcggcccccccggcgcgcgccccccggggcggccgccccccgtcgcgaggcccccgcgcggcggccgcggggcgccccgccc Query ntron---> QADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFIR <---Intron---> FGSFEI 460bp > |||||||||||||||||||||||||/|||||||||||/||||||||||||||||/||||||/||||/| < 1335bp > |||||| Target QADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDVFYDGNPKYEKCTVVLRIASTFLR FGSFEI cgggcagcctaacgtctaggatccgacaacgggtgatctaggcggttggacatgataggtcagtatca tgttga acaggattgcgtgattggacttatgtcccgcgcgtccaccttgattaagacaaaagctttgtcccttg tgctat agccccgcgggccggcgctacgccgccgcggcgcccgcgcaccccgcttttcatagcgtggtatctta gccctgt Query FKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE <---Intron---> VTQRTARMVAEWQCVGFCHGVLNTDNMSIL |||||||||| ||||||||||||/||||/ /|/||||||||/|||||||||||| < 934bp > ||/||||||||||||||||||||||||||/ Target FKSADEHTGREGPSVGRNDIRVQMLDYVVGTFFPEIQAAHAADSVQRNAAFFRE VTRRTARMVAEWQCVGFCHGVLNTDNMSIV tatgggcagcggcaggcagacgcacgtgggattcgacggcgggagcaaggttcg gaccagcagggtctggttcggcaagaaaag taccaaacggagcgtggaatgtattaattgcttcataccaccagtagaccttga tcggccgttcagagtgtgagttacaatgtt tgcacgcggtgcccgggcccgagggccggcgcccgcgctcccccgggcgcccgg ggtcgcgggcgggtgcccccgccgccgccg Query GLTIDYGPFGFLDR <---Intron---> YDPDHVCNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDAEFQRHYLQKMRRKLG |||||||||||||| < 324bp > |||||||||||/ ||||||||||||/|||/||||||/|||| /||||||||||||||/|||||||||||| Target GLTIDYGPFGFLDR YDPDHVCNASDSAGRYAYSKQPEVCKWNLQKLAEALEPELPRQLGEAILAEEFDAEFRRHYLQKMRRKLG gcaagtgctgtcgc tgcgcgtagtgaggctgtaaccggtataccacgggcgcgcccccgggacgggtgggtccctccaacaacg gtctaagctgttag aacaatgaccagcggacagaacatgagataatcactacatcgatgacttcaatacatggaataatggatg ccccccgccccgc gcctccgctcgcccgccgccggcagcggcggggggcggcggccggcgccgtggcccgccgccggggcgggc Query LVQVELEEDGALVSKLLETMHLTG <---Intron---> ADFTNTFSLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPR <---Intro ||/ ||/| |||//||||||||| < 2982bp > ||||||| |||||| / / ||| |/ ||||||||/|||||||||| < 769bp Target LVRAALEDDAALVARLLETMHLTG ADFTNTFCLLSSFPAGPDPLDVPEFLDTLIAQCASLEELKLAFRPQMDPR cgcggcgggggcggaccgaaccag ggtaaatttcattcggcgccggcgtcgacagctgtcggcacgtcccagcc ttgcctaaaccttcgttactatc gcatcactgttgctccgcactatcattacttcagcctaatatctgcatacg ggcccggccagcgcgcggcgcgc tcccaccccagcccatgaccgcgcgcgcagcagtccgggggcccgcggtc Query n---> QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQAYR <---Intron---> ARLDKDLEGAGDAAAW > ||||||||||||||||||/|||| /||||||||||||||||||||| |||/ ||||||/ || < 91bp > |||/|| ||/ / || Target QLSMMLMLAQSNPQLFALIGTRANVARELERVEQQSRLEQLSAAELLSRNRAHWADWLREYR ARLEKDREGSSGSDAW cctaacacgctaccctgcagacgaggagcgcggcctccgccagggctaaaagctggtccgta gccgagaggtagaggt atctttttcacacattcttgcgcatcgatagtaaacgtaatgccattggagcagcagtgaag cgtaaagagcgggacg ggccgggggaggcggccgcccggccccggggaggggggggggcgcgggcgcgccgccggggc acggggcggctcctccg Query QAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEASTRL <---Intron---> SLWSLGGGRPQTPLTLLILQVRRVLKLLETPYHCEAGAATDAE |||||||| ||||||||||||||||||||| ||||| | /| < 52bp > |/||| | /||||||||||| ||| | | | Target QAEHVRVMRANNPKYVLRNYIAQNAIEAAENGDFSEVSRQL ---------PKTPL-LALLQVRRVLKLLEAPYHTEGEATEALE cggcgcgacgaacatgccatagcagaggggaggttggaacc ---------caacc-cgcccgccgcaccggctcaggggaggcg acaatgttgcaacaattgaatcaactaccaagatcatggat ---------cacct-tcttatggttattaccaacagaccacta gcgcgccgtccccgtcggcccaatccgttgtaccagacaat ---------tactc-tctcgggggggagactccagggctgggg Query ATEANGADGRQRSYSSKPPLWAAELCVTUSS | | || | ||||||||||||||||||| Target AAGAGGAHGGGHSYSSKPPLWAAELCVTUSS gggggggcgggcttaaaccctgggctgattt ccgcggcagggacaggacctgccatgtcgcc cagtcgatcggcccccgcgcgggggtggacg * Sequence until next stop: TAA *