------- SECIS element -- id:1 -- grade:A ----
 Chromosome = PISW01000482.1:subseq_465714,111875_ Strand = + Positions = 107793 - 107860
 Found by:  Infernal (score=36.78) Covels (score=31.88)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -25.3

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((({((---....{[[{((([(((((((........-----..)))))))])))}]]}..--....))}))))))
 target  CGCAGCAGC---CCCAUGAUGGCGGGACCUGAAAUCCUC-----GAUGGGUCCAGCUUGAUGU--CUUCGCAGCUGCG
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = PISW01000482.1:subseq_465714,111875_ Strand = + Positions = 105022 - 105106
 Found by:  Infernal (score=15.12) Covels (score=5.67)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -14.71

         ..(((((((...............(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(((({((((..............([[{(((((([(((......--.........)))]))))))}]])......-..))))})))).
 target  UUCGCCCAUCCUCGCCCUCCUCAAUGAGAGCUUCAUCAGCACUU--GGUCCCUGGUGAGGGAGCUGGAAGACAUG-CAGGUGAGCGGC
                                 ****                                     ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = PISW01000482.1:subseq_465714,111875_ Strand = + Positions = 107394 - 107467
 Found by:  Infernal (score=12.17) Covels (score=7.24)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -20.41

         ..(((((((........(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((((({(.........([[((({(((((((------...........)))))))})))]])......-....)}))))))
 target  UCUGGGGCAGCUCACUGUGAAGGAGGCUCCU------GCUCCUAGCAGGGGAGUCCCCUGAGGGGUUC-CUGAGGCCCAGG
                          ****                   ^^                ****