------- SECIS element -- id:1 -- grade:B ----
 Chromosome = PISW01000182.1:subseq_230789,100000_ Strand = - Positions = 14885 - 14846
 Found by:  Infernal (score=11.29) Covels (score=0.22)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -11.74

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         -----------------[[(((((((((((......---........)))))))))))]]------------------
 target  -----------------GAGGGUAGGCGUUCAAAUC---CUUGUUUUGAUGCUUACCUGA------------------
                          ***           ^^^                       ***                  



------- SECIS element -- id:2 -- grade:B ----
 Chromosome = PISW01000182.1:subseq_230789,100000_ Strand = - Positions = 99873 - 99797
 Found by:  Infernal (score=10.09) Covels (score=6.38)
 Stem2 length = 11   Apical loop length = 12   Insertion in stem2 = 0, 2
 Free Energy = -17.9

         ..(((((((.......(((((((((((((((...............)))))))))..))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg--cCuGAUGuu-u-uuucaugaccggc
         ...((({{(---((..([[((((((({(((((....-........)))))}))))..)))]])......-.)))}})))...
 target  AAUGGGUGA---GGUUUGAGGAGCCAGAUCUUAACU-CCCACUCGGGGAUGUGGCUCUCUGAAGCUCUG-UCCUGUCCCCAG
                         ****            ^^                         ****                   


------- SECIS element -- id:3 -- grade:B ----
 Chromosome = PISW01000182.1:subseq_230789,100000_ Strand = - Positions = 41339 - 41255
 Found by:  Infernal (score=10.02)
 Stem2 length = 8   Apical loop length = 26   Insertion in stem2 = 0, 0
 Free Energy = -20.37

         ..(((((((.......(((((((((((((((........................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---------cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .(((((((((--....([[(((({((({((..........................))})))}))))]]).....-..))))))))).
 target  CAGACAGAGG--GCCUGGAGGGCUGCCCGAUAAAGCCAGUUCCUGCCCUUUAAGCCUCUGGCUGUCUGAUGCCUU-UAUCUCUGUCUC
                         ****           ^^^                                ****