------- SECIS element -- id:1 -- grade:A ---- Chromosome = PISW01002128.1:subseq_110159,100000_ Strand = + Positions = 50899 - 50976 Found by: Infernal (score=20.61) Covels (score=23.02) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 1 Free Energy = -13.26 ..(((((((.......(((((((((((((((...............))))))))).)))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc (((((((((((.....{[[({((((((((((...............))))))))).)})]]}.....-)-)))))))))) target CAAAGAUUUGUAUUAAUGAAGACUACACAGGAAACCUUCAUGAGGAUUUGUGUGGAUGUGAUAUUUA-G-CAAAUUUUUG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = PISW01002128.1:subseq_110159,100000_ Strand = - Positions = 49726 - 49656 Found by: Infernal (score=10.38) Covels (score=5.18) Stem2 length = 10 Apical loop length = 13 Insertion in stem2 = 1, 0 Free Energy = -10.72 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .({((((((---....([[((((((.({(([(.....--........)]))})))))))]])..--..-.))))))}). target AUCAAGCCU---GAUGUGAGGUUCAAUCUCAUAAACC--AUGAGACCAGGACAUGAGCUGAAGU--CA-GAGGCUUAAC **** ^^^ ****