_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|168480075|ref|NP_001108208.1| selenide, water dikinase 2 [Canis lupus familiaris]
 Query range: 1-447  (total 447)

 Target: /data/www-rg/seblastian_results/900708682/tempfiles/temptarget.fasta
 Chromosome: PISW01000219.1:subseq_600410,100000_ Strand: +
 Positions:
 -Exon 1  49928        51268

 Redox box: no

Query   MAEAAATGAGGEVAAAAEGSGSAGLSLGRGFSSYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPEVRPPLGLGLVGSHEEAAQEGG
        |||||| |||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||||||||||||/|||| ||||||||||||||||
Target  MAEAAAPGAGGEVAAAAEGSGSAGLSLGRGFSSYRPFEPQSLGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPPSGLGLVGSHEEAAQEGG
        agggggcggggggggggggtgtggttcgcgttatcctgcctcgcacatccagttgaagtgtagccgaccaccggcaccggccctgcgcggacggggcggg
        tcaccccgcggatccccagcgccgtctgggtcgagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcccgtgttggaaaccaagg
        ggaggggccccggggggacgccccgtgccccgccgccgcgtgtccgcggggccccggcaccaccggggcacggagggactgcggtgcgcactgggcgacc
                                                                  *                                         

Query   LPAGADPNPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMTEEEREKITPLMIKGFRD
        | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LAAGADPNPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMTEEEREKITPLMIKGFRD
        cgggggcacatcgcgagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaatatcagacaaagggcgaaaccaaagtcg
        tccgcacacctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtcaaagaatcctttagtga
        ggcggcccactacgctggccccacggcgcgagggcgcccccagatccgggcagtccggtccccgtttatccgggaccccgtgtggaaagaagcgcactat
                                                                                                            

Query   AAEEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKINMVVSREEVELAYQEAMFNMATLNRT
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AAEEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKINMVVSREEVELAYQEAMFNMATLNRT
        ggggggaggaggcaggactaagggggaggtccagtaacgaggggggcgtaactgacgggagcctcgacgataaaaaggtaggggcgtcggataagacaaa
        ccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatcaaacttatcctagc
        ttgaattggttaagaactgtccagtctgatgatacagtctattgtgcgacacaacgttctccaggtttaagtaatggccaagagattgacgctgtcacat
                                                                                                            

Query   AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQA
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQA
        gggcacatagcggagaagtgacgctcacgaccaaggttgacatcaagaaggaaagagctgcccgatggatggtcatccagcggctttgaattatgggccg
        ccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaagagaac
        ttaagcgttacacatcactctaactgttgaaaatgggtctttgactcggtcccgctgctgctaccaaagtgaagttggaagatatttacatcgtagtcaa
                                                                                                            

Query   WIVGIVEKGNRTARIIDKPRVIEVLPRGATATALAPDNSNASSEPSS
        ||||||||||||||||||||||||||||||/ || ||||||/|||||
Target  WIVGIVEKGNRTARIIDKPRVIEVLPRGATSAALVPDNSNAASEPSS
        taggaggagacagaaagaccgaggcccggatggcgcgataggtgcat
        gttgttaagagccgttaacgttattcggcccccttcaacacccacgc
        gctttgagacgatgctcgtattgcattgcctttcttctcttctgtcc
                                                       
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 570 ; UGA-SECIS: 1734

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = PISW01000219.1:subseq_600410,100000_ Strand = + Positions = 51839 - 51915
 Found by:  Infernal (score=30.77) Covels (score=23.53)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -17.11

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({(((((--....([[{(((((((.((...................)))))))))}]])......-.-)))))}))))
 target  UUGGUCUCUG--UUCAUGACGUCUCUCCCUCUAAACCCCUUUAAGGACUGGGAGAGGCAGAGCAAGCC-C-CAGAGCCCAA
                         ****            ^^^                       ****