_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-27
 Query name: gi|16751520|dbj|BAA03863.2| plasma glutathione peroxidase, partial [Homo sapiens]
 Query range: 2-51  (total 51)

 Target: /data/www-rg/seblastian_results/947190719/tempfiles/temptarget.fasta
 Chromosome: PISW01005197.1:subseq_0,100000_ Strand: +
 Positions:
 -Exon 1  30106        30255

 Redox box: no

Query   DCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYI
        |||||/| |||||||||||||||||||||||||/||||||||||||||||
Target  DCHGGVSSTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLTGQYI
        gtcgggaaaatgtggcaaggggtactactggatactgaggattgcagcta
        agaggtggctaaagctctagaaatctaaacgaattttatcgaggtcgaat
        ccttcgcctctatacccctgggccttggttcactgtccgcccacgacgct
                                                  *       
 Sequence until next stop: 
GGTAAGAGCCCACCTCCCCTCCCCGCTCTGGGGCTGTTTCTGCCAGTTGGACACATTTCAATCACAGGAGCGTTTTTGGTGCAAGGGGAAAGGGGAATCATCAGATTCCAAACCGTGTATCCCAGTTCTACTGTGTTCCATGTTTTTTAA
 G  K  S  P  P  P  L  P  A  L  G  L  F  L  P  V  G  H  I  S  I  T  G  A  F  L  V  Q  G  E  R  G  I  I  R  F  Q  T  V  Y  P  S  S  T  V  F  H  V  F  * 

 Distance CDS-SECIS: 1118 ; UGA-SECIS: 1139

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = PISW01005197.1:subseq_0,100000_ Strand = + Positions = 31374 - 31455
 Found by:  Infernal (score=10.86)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 1
 Free Energy = -10.01

         ..(((((((.......(((((((((((((((..................))))))).))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggcca-ggcCuGAUGuu--u-uuucaugaccggc
         .(({((((((......{[[{((((-(((((....................)))))-.))))}]]}.......-..))))))})).
 target  UCCCGUCAGGCCUCAGUGAUUUCA-GCUAUACAAUAGGAGAGCAGGUGGAGUGGU-AUGGAUGAUGCGGGGC-UCCUUGACAGGU
                         ****            ^^                           ****