_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-76
 Query name: gi|1044368415|ref|XP_017389495.1| PREDICTED: glutathione peroxidase 2 [Cebus capucinus imitator]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/48552832/tempfiles/temptarget.fasta
 Chromosome: PISW01000412.1:subseq_421224,100000_ Strand: +
 Positions:
 -Exon 1  47403        47624
 -Exon 2  50012        50359

 Redox box: no

Query   MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        ||/|||||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||| <   2387bp   > ||||||||||
Target  MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDYTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcatcactaatgctgtagaatatactgggctttaatcctggcccgaacataataggtcggttttgtcgaatgaa                aagaaaatta
        gtcacgcccccctccgtgggatccgcacgaggcgcgcgcacactgcccgccggacctcgcggttcctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        ||||||||||/|||||||||||||||||||||||||||||||||||/|||||||||||||||||||/|||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPYSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctccggcttcaagcataatacgcctggttatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaacacttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgtgctgtacgcctctcagcggttgcgctccccggcgcccgttcatccgttcgcctgcggccatgcgctggcttggaggccccctccctccctatccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 224 ; UGA-SECIS: 674

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = PISW01000412.1:subseq_421224,100000_ Strand = + Positions = 50584 - 50647
 Found by:  Infernal (score=29.61) Covels (score=23.06)
 Stem2 length = 10   Apical loop length = 8   Insertion in stem2 = 0, 0
 Free Energy = -22.6

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---(...([[{(((((({((((.....--.-----..))))}))))))}]])----...))))))))..
 target  GGCCUUCAC---AGAAUGAUGGCAUCUUCCGAAAGU--G-----UAUGGGCGGUGUCUGAG----AAGUGUGAAGGGC
                         ****           ^^^                       ****