_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-77
 Query name: gi|262050622|ref|NP_001159951.1| glutathione peroxidase 1 [Equus caballus] >gi|958694271|ref|XP_014695906.1| PREDICTED: glutathione peroxidase 1 [Equus asinus]
 Query range: 1-200  (total 201)

 Target: /data/www-rg/seblastian_results/279662752/tempfiles/temptarget.fasta
 Chromosome: PISW01001800.1:subseq_218681,102289_ Strand: -
 Positions:
 -Exon 1  100590       100835
 -Exon 2  100000       100353

 Redox box: no

Query   MCAAQLAAAARRSVYAFSARPLAGGEPLSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron---> EN
        / || ||||| ||||/|||||||||||/|||||||||||||||||||||||||||||||||||||||||||||||||||||| <   236bp    > ||
Target  LAAAALAAAAPRSVYSFSARPLAGGEPMSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ                EN
        cggggcggggcctgttttgcctggggcaacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc                ga
        tcccctcccccgctactccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa                aa
        cacctcgtgcgccgccctgcggtcggcgcgtcggcaggccgtgggcaaagcgcccggcggggccgcgtgcgcctcccgcgtg                gc
                                                      *                                                     

Query   AKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLREALPAPSDDATALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFPTI
        |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||
Target  AKNEEILNCLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFTFLREALPAPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFPTI
        gaaggacatcatgccgggtgcatactgatggaggcgccctatccggccgcagggagcaagcataattcgtcaggttatgatcggcgggcgcatacctcaa
        caaaattagtaatgcgggtacatcttaagatagcacacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggagggtcct
        tacagcgttcgccatccgcgtccattggcgatcgggccccccgtgtgtcctctctgcgccggcccgtagccccacgctagcggcattgtgcgcccctacc
                                                                                                            

Query   DIEPDIEALLTQGPSC
        ||||||||||/| |||
Target  DIEPDIEALLSQRPSC
        gagcgaggcctcccat
        atacatacttcagcgg
        ctgtccacggcggcct
                        
 Sequence until next stop: 
CCCTAG
 P  * 

 Distance CDS-SECIS: 53 ; UGA-SECIS: 512

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = PISW01001800.1:subseq_218681,102289_ Strand = - Positions = 99946 - 99877
 Found by:  Infernal (score=29.1) Covels (score=24.03)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 1, 0
 Free Energy = -18.0

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((({((((.--....{[[{((((((.((((.........-----...))))))))))}]]}..--....))))}))))
 target  GGGGAUUUCA--UCCAUGACGGUGUUUCCUCGAAAUCUGC-----AUAGAGGAAUGCCUGAUUU--CCAGGAGAACUCC
                         ****            ^^^                       ****