_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-26
 Query name: gi|1033368099|ref|XP_016851024.1| PREDICTED: redox-regulatory protein FAM213A isoform X3 [Anolis carolinensis]
 Query range: 1-229  (total 229)

 Target: /data/www-rg/seblastian_results/901618047/tempfiles/temptarget.fasta
 Chromosome: SJPD01000014.1:subseq_6915164,107296_ Strand: +
 Positions:
 -Exon 1  50015        50192
 -Exon 2  50461        50555
 -Exon 3  52579        52719
 -Exon 4  55311        55475
 -Exon 5  57207        57314

 Redox box: YES

Query   MCSHLELGSFSVAMWTIGLGAIGAAVTGIILANTDLFLSKAEQASLDFLEAIDLKTLGEG <---Intron---> NQRTFKAEELWKKNGAVIMAVRRP
        ||  |/ ||||/|||| ||||||||||||||||||||| |||/||||||   |||||| | <   268bp    >  ||| || ||||||||||||||||
Target  MCLQLDPGSFSMAMWTAGLGAIGAAVTGIILANTDLFLPKAEKASLDFLAEADLKTLGHG                EQRTLKAGELWKKNGAVIMAVRRP
        attccgcgtttagataggcggaggggagaacgaagctccaggagtcgtcggggcaacgcg                gcaacagggctaaagggaaggccc
        tgtatacgctctctgccgtgctgcctcgtttcacatttcacaacctattcacatactga                gaagctacgatgaaagctttctggc
        gtgggcgggccgcggctcgaccgttgagccgccatctctagagcggtttggtcggggac                agaaacaaagggggttgccgatgcc
                                                                                                            

Query   GUFLCRE <---Intron---> EAAELSSLKPQLDKLGVPLYAVVKENLGTEVMDFQPYFKGEIFLDEK <---Intron---> KQFYGPQKRKMLFM
        ||||||| <   2023bp   > |||||||||||||/||||||||||||/|||| ||||||||||||||| <   2591bp   > |/||||||||||||
Target  GUFLCRE                EAAELSSLKPQLDQLGVPLYAVVKENIGTEVEDFQPYFKGEIFLDEK                KRFYGPQKRKMLFM
        gttttag                ggggcttcacccgccggcttgggagaagaggggtccttaggatcgga                acttgccaaaatta
        ggttgga                accatcctacataatgtctacttaaatgcataatacatagatttaaa                agtagcaagatttt
        aatgcag                gctggctcgggtcggcccatttgagccgtaggtcgctcagactgtag                aaccatagagggcg
         *                                                                                                  

Query   GFIRCSVWRNFFRAWKSGYTGNIDGEGFVLGGVFVVGPGKQ <---Intron---> GVLLEHREKEFGDKVSLDAVLEAVKNIQPQPSEKDK
        | || /|||||||||/||/|||/|||| /||||||/||||| <   1731bp   > |||||||||||||||||| |//|/| |/|||||  |
Target  GLIRYNVWRNFFRAWRSGFTGNLDGEGIILGGVFVLGPGKQ                GVLLEHREKEFGDKVSLDVVIDALKKIKPQPSEDKK
        gcactagtaattcgtaagtagatggggaacgggtgcgcgac                ggccgccgagtggagacgggaggcaaaaccctggaa
        gttgaatggattgcggggtcgatagagtttggttttgcgaa                gtttaagaaatgaatgtatttactaatacaccaaaa
        cgccctcggcccttggtccggcgcaactcgacttgcttgag                ttgggctggatacagcttgcttgtgacgtataataa
                                                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 163 ; UGA-SECIS: 592

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJPD01000014.1:subseq_6915164,107296_ Strand = + Positions = 57478 - 57548
 Found by:  Infernal (score=19.4) Covels (score=22.87)
 Stem2 length = 11   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -26.7

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((({(((((.....{[[[[((((((((((.....-..-----..))))))))))]]]]}.....-)-))))})))..
 target  UGUCUUACUGGUUUGAUGAAGGGCUUGAUCUAAAAU-UU-----UAAGAUCAGGCCAGGAUGGUUU-C-CAGUUGGAAC
                         ****           ^^^                       ****