_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-39
 Query name: gi|1002577066|ref|XP_015667711.1| PREDICTED: selenide, water dikinase 2 isoform X2 [Protobothrops mucrosquamatus]
 Query range: 1-357  (total 379)

 Target: /data/www-rg/seblastian_results/510085147/tempfiles/temptarget.fasta
 Chromosome: SJPD01000051.1:subseq_3658260,106556_ Strand: -
 Positions:
 -Exon 1  56373        56673
 -Exon 2  55595        55698
 -Exon 3  55322        55429
 -Exon 4  54712        54866
 -Exon 5  53732        53822
 -Exon 6  53244        53343
 -Exon 7  50546        50766

 Redox box: no

Query   MAAVAGSPSATLPSLAATTAPSPAALP-PGPPGYRPFEPEAVGLSPGWRLTSYGELRGUGCKVPQETLLRLLEGLGTSHAGLAGAGDTG---AAGNPPPT
        |||/||||||/|||| || |||||  |  ||||||||||||/||||||||||||||||||||||||||||||||||   /||||||/     |||/| ||
Target  MAALAGSPSASLPSL-ATAAPSPAPPPLLGPPGYRPFEPEALGLSPGWRLTSYGELRGUGCKVPQETLLRLLEGLGGPPSGLAGAGEAAAAVAAGSPAPT
        aggcggtctgtcctt-gaggcacgcccccgccgtcctgcggcgcacgtacaatggccgtgtagccgaccaccggcggcctgtgggggggggggggacgca
        tcctcgccccctcct-cccccgcccccttgccgagctacactgtgcgggtcgagatgggggatcaacttgttagtggcccgtcgcgacccctccggcccc
        ggaccatgcctgtcg-ggccgtgcgggttcgtccgtcgcagggtcgcggccccagggcaccaccggggcacggacccatcagcaagggtgtactaccttc
                                                                  *                                         

Query   LG <---Intron---> IGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM <---Intron---> GRIACANVLSDLYAMGITECDNMLMLLSISQK
        /| <   674bp    > |||||||||||||||||||||||||||||||||| <   165bp    > ||||||||||||||||||||||||||||/|||
Target  IG                IGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM                GRIACANVLSDLYAMGITECDNMLMLLSVSQK
        ag                agagttgactacggctcgcaagtttccgggctaa                gcagtgagcagctgagaagtgaacaccagaca
        t                gtgtacgttctgaggtcttaccattacttaacatt                ggtcgcattgatactgtcagaatttttgtgaa
        t                ctagtctgccgacatcctaggaccttagggcttgg                tctctctgctccctgccagtccgtgggtgcga
                                                                                                            

Query   MTEE <---Intron---> EREKIMPLIIKGFRDAAEDGGTSVTGGQTVLNPWIIVGGVATVVCQPNEFIM <---Intron---> PDSAVPGDVLVL
        ||/| <   455bp    > ||/||||||||||||/|||||||||||||||||||||||||||||||||||| <   889bp    > ||||/|||||||
Target  MTDE                ERDKIMPLIIKGFRDSAEDGGTSVTGGQTVLNPWIIVGGVATVVCQPNEFIM                PDSAIPGDVLVL
        aagg                gcgaaaccaaagtcgtgggggatgaggcagtactaagggggaggtccagtaa                cgagacgggcgc
        tcaa                agaattctttagtgaccaaggcctcggacttacgtttggtccttgacaattt                cagctcgatttt
        gttg                ggcacgagatgccgtaaattctaattagacattgtttaataatatgctact                gactatagtgtgc
                                                                                                            

Query   TKPLGTQVAVNAHQWLDN <---Intron---> PERWNKIKLVVSKEDVELAYQEAMFSMAMLNRTA <---Intron---> ASLMHTFNAHAATDIT
        |||||||||||||||||| <   388bp    > ||||||||||||/||||||||||||||||||||| <   2477bp   > ||||||||||||||||
Target  TKPLGTQVAVNAHQWLDN                PERWNKIKLVVSREDVELAYQEAMFSMAMLNRTA                ASLMHTFNAHAATDIT
        aaccgacgggagcctcga                cgctaaaacggtaggggcgtcggataagacaaag                gatacatagcggagaa
        cactgcatctacaagtaa                caggaatatttcgaatatcaaacttgtcttagc                ccgttactacacccatc
        cgaggtgatgtgcggatc                agagtgtagatcaattagtcgatgttgcggcga                tctggcctttttcataa
                                                                                                            

Query   GFGILGHAQNLAKQQRSEVSFVIHNLPIIAKMAAISKACGNRSRLLQGTSPETSGKL
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||/
Target  GFGILGHAQNLAKQQRSEVSFVIHNLPIIAKMAAISKACGNRSRLLQGTSPETSGKI
        gtgacgcgcacgacccaggttgacaccaagaaggaaagtgactacccgatcgatgaa
        gtgttgacaatcaaaggatctttaatcttcatcctgacggagcgttagcccaccgat
        ctgtgctagcacgggctggacccttgtctcggttccaattcatgcaagacagattga
                                                                 
 Sequence until next stop: 
GCCTAA
 A  * 

 Distance CDS-SECIS: 890 ; UGA-SECIS: 1796

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJPD01000051.1:subseq_3658260,106556_ Strand = - Positions = 49655 - 49580
 Found by:  Infernal (score=31.54) Covels (score=21.44)
 Stem2 length = 7   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -20.05

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((((((.--....([[{(({(((((......................)))))}))}]]).....-.-.)))))))..
 target  CUCUCCUCUC--UUCAUGAAGCACCUCCUUUAAAUCCCACUUGUGGGCUUGGAGGAGCAGAGGAAUC-C-UAGAGGAGCA
                         ****           ^^                         ****