_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-48
 Query name: gi|1004686949|ref|XP_007435318.2| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Python bivittatus]
 Query range: 1-183  (total 194)

 Target: /data/www-rg/seblastian_results/282164530/tempfiles/temptarget.fasta
 Chromosome: SJPD01000092.1:subseq_1998178,100161_ Strand: -
 Positions:
 -Exon 1  54721        54795
 -Exon 2  50904        50998
 -Exon 3  50285        50429
 -Exon 4  49998        50149
 -Exon 5  49160        49184
 -Exon 6  48987        49043

 Redox box: no

Query   MSLRRLASKTLLCGLLIGRGLTRAM <---Intron---> CAQVTDWQSAKSIYEFHAKDIDGNDVSLEKYR <---Intron---> GHVCIITNIAS
        ||/|||| /| |||||  /||/| | <   3722bp   > ||| /|||/||||||||| ||||||||||||| <   474bp    >  |||||||/||
Target  MSVRRLAGRTWLCGLLAAQGLSRTM                CAQPSDWQTAKSIYEFHALDIDGNDVSLEKYR                DHVCIITNVAS
        aagcctggcatctgccggcgcaaaa                tgcctgtcagatatgtcgtgaggaggtcgata                gcgtaaaaggt
        tgtggtcggcgtggttccagtggct                gcaccagaccactaatactatagaatctaaag                aatgttcatcc
        gtggcgggggggcggggggggcggg                taatatggacacccgcccgtttctttcggac                gcccccccccga
                                                                                                            

Query   EUGKTNVNYTQFVELYSRYAERGLRILAFPCNQFGKQ <---Intron---> EPGTNEEIKAFAEGYGVKFDMFSKIDVNGDGAHPLWKWMKSQPKGRG
        /|||| |||||||||||||||/||||||||||||||| <   135bp    > |||||||||||| |||| |||| ||/|||||||||||||||||||||
Target  KUGKTGVNYTQFVELYSRYAEKGLRILAFPCNQFGKQ                EPGTNEEIKAFAAGYGVTFDMFGKIEVNGDGAHPLWKWMKSQPKGRG
        atgaaggatactggctaatggagtcacgtctactgac                gcgaaggaagtgggtggatgatgaaggaggggccctataaaccagcg
        aggacgtaacattataggacaagtgttctcgaatgaa                acgcaaatactccgagtctattgatatagagcactgagtagacaggg
        aacgtcacctgtcgcccattgataccacccccgtcgg                ggcctggcattttaccggtcgtcgcaccgcccctcgggggcgcacgg
         *                                                                                                  

Query   TLGN <---Intron---> AIKWNFSK <---Intron---> FLINREGQVVKRFSPMDDP
        /||| <   813bp    > ||||||/| <   116bp    > ||||/|||||||/||||||
Target  SLGN                AIKWNFTK                FLINKEGQVVKRYSPMDDP
        tcga                gaatataa                tcaaaggcggaatacaggc
        ctga                ctagatca                tttaaagattagagctaac
        tga                cctagcccg                ccccggcgggaactggtcc
                                                                       
 Sequence until next stop: 
CAGGTAAGCTGCCGCCCATCCCGCTTTCGCCTGGAGTGCAGAGATGCTGTGAAATAG
 Q  V  S  C  R  P  S  R  F  R  L  E  C  R  D  A  V  K  * 



 Distance CDS-SECIS: 1043 ; UGA-SECIS: 1382

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJPD01000092.1:subseq_1998178,100161_ Strand = - Positions = 47943 - 47869
 Found by:  Infernal (score=25.7) Covels (score=24.78)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -20.01

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....([[{(((({{((((...................))))}}))))}]])..--....)))))....
 target  UGCACUGCC---CCAGUGACGGCCUCCCUCCAAGCCAAGCCCUCUUGGCGAGGCUGGCCUGAAUA--AACUGGCAGGAGC
                         ****           ^^                          ****