------- SECIS element -- id:1 -- grade:A ---- Chromosome = SJPD01000061.1:subseq_3198079,102810_ Strand = - Positions = 102151 - 102082 Found by: Infernal (score=20.19) Covels (score=21.11) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -9.76 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .((((({[(---....{[[[((((((((((......--.........))))))))))]]]}..--..-.)]}))))). target GUGCCAGAA---AGAAUGAAGUGACUGGGUCAAAGC--CGAAAGGACACUCAGUUGUGGAUGU--GU-CUGGUGGUGA **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = SJPD01000061.1:subseq_3198079,102810_ Strand = - Positions = 41259 - 41182 Found by: Infernal (score=12.75) Covels (score=10.31) Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -7.99 ..(((((((.......(((((((((((((((...............)))))))))))))))..............))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-----u-uuucaugaccggc ...(((({(---....{[[({(((((((((......--.........)))))))))})]]}..........-...)}))))... target GGUUGAGGC---UGAAUGAGUAGCUUAUCUAAGACC--AACUGCAAAAGAUAAGCUUUGACUUGGGGACUU-CCUGGUUCACAG **** ^^ ****