------- SECIS element -- id:1 -- grade:A ---- Chromosome = SJPD01000085.1:subseq_1820578,101918_ Strand = + Positions = 22253 - 22322 Found by: Infernal (score=23.53) Covels (score=22.71) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -18.66 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .((((({[(---....{[[{((((((((((......--.........))))))))))}]]}..--..-.)]}))))). target GCGCCAGAA---AGAAUGAAGCGACUGGGUCAAAGC--CGAAAGGACACUCAGUUGCAGAUGU--AU-CUGGUGGUGA **** ^^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = SJPD01000085.1:subseq_1820578,101918_ Strand = + Positions = 55154 - 55232 Found by: Infernal (score=22.04) Covels (score=25.02) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -12.05 ..(((((((.......(((((((((((((((...............)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ..(((((((.......([[[((((((({([(...............)])})))))))]]])......-...))))))).. target GUGUGGUUUCAUUGCAUGAAUUGCCCCACAUAAACCCUUCUGCGGGAGGAGGGGUAAGGAACUCCUA-GAUGAACUGCCC **** ^^^ ****