------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJPD01000036.1:subseq_7794146,118064_ Strand = - Positions = 43430 - 43364
 Found by:  Infernal (score=33.46) Covels (score=20.46)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -20.4

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((.--....{[[{((({((((((.........-----...))))))})))}]]}----....)))))))))
 target  UCAUCUGUUC--UUUGUGAUGGCCUGGCCUCAAACCAGA-----AAUGGGUCAUGCUUGAU----UUCUGACAGGUGA
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = SJPD01000036.1:subseq_7794146,118064_ Strand = - Positions = 36326 - 36258
 Found by:  Infernal (score=13.0) Covels (score=0.94)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -17.86

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((---((..([[(((((({{(((......--.........)))}}))))))]])----..))))))}))..
 target  GUGUAGUGG---UGUGUGAUGGUUGUUUCUUCAUUC--CACUGUCCUGGAUCCAACCAGAA----ACUAUCAUAGCUU
                         ****                                     ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = SJPD01000036.1:subseq_7794146,118064_ Strand = + Positions = 13163 - 13252
 Found by:  Infernal (score=11.76)
 Stem2 length = 10   Apical loop length = 28   Insertion in stem2 = 0, 0
 Free Energy = -10.13

         ..(((((((........((((((((((((((..............................))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccgAAAcCcuuuuuggggu-------------gggccaggcCuGAUGuuuuuucaugaccggc
         ..(((({((........{[[(({(((((((((............................)))))))))}))]]}..--....))}))))..
 target  UGUUUGCUAUGUUUUGAUGAAGCACUGGACAUGGUUACUCAAAAGAGUCAGAUGGACUUAAUGUUCAGUUUUGAUGA--AUGCUGCCAGAGA
                          ****                                                  ****