_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-08
 Query name: gi|1033379888|ref|XP_008120773.2| PREDICTED: ethanolaminephosphotransferase 1 [Anolis carolinensis]
 Query range: 19-410  (total 410)

 Target: /data/www-rg/seblastian_results/938803252/tempfiles/temptarget.fasta
 Chromosome: SJPD01000126.1:subseq_901142,105541_ Strand: -
 Positions:
 -Exon 1  63405        63476
 -Exon 2  63008        63116
 -Exon 3  60895        60969
 -Exon 4  59752        60014
 -Exon 5  50793        50901
 -Exon 6  50489        50537
 -Exon 7  49994        50174
 -Exon 8  49257        49439
 -Exon 9  47676        47801

 Redox box: no

Query   KYSAVDSNPLSLYVMHPFWNTVVK <---Intron---> IFPTWLAPNLITFCGFLLLVFNFFLMAYFDPDFYASA <---Intron---> PDQEHVP
        /|||||/||||||||||||||||| <   288bp    > ||||||||||||| |||||||||||||/||||||||| <   2038bp   > ||| |||
Target  QYSAVDNNPLSLYVMHPFWNTVVK                IFPTWLAPNLITFSGFLLLVFNFFLMAHFDPDFYASA                PDQAHVP
        ctagggaacctctgaccttaagga                atcatcgcacaatagtcccgtattcagctgcgttgtg                cgcgcgc
        aagctaaactctattactgactta                ttccgtccattctggttttttattttcatacatacc                ccaacatc
        gcccgcccgccgtggttcgccacg                tctgggcatgagttccggtccccctgattttcttag                aacggttg
                                                                                                            

Query   NAIWVVVGLLNFMAYTLD <---Intron---> GVDGKQARRTQSSTPLGELFDHGLDSWACMFFVVTVYSTFGRGPNGVSVFVLYLLLWVVLFSFILS
        / /|//|||||||||||| <   880bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SHVWIIVGLLNFMAYTLD                GVDGKQARRTQSSTPLGELFDHGLDSWACMFFVVTVYSTFGRGPNGVSVFVLYLLLWVVLFSFILS
        acgtaaggccatagtacg                ggggacgccactaaccggctgcgcgatgtattggagttatgcgcaggagtgctccctggttttact
        gatgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtttttctacctgggcagtgttttatttgttttctttc
        ccggccgccctcgccag                tcgcgggtcccgccggcggctccccccggcgccggggcccccggcccccccgccccgggcgcccccc
                                                                                                            

Query   HWEKYNTGILFLPWGYDISQV <---Intron---> TITIVYIVTSIVGVEAWYNPFLFNFFYRDLFVAMIVG <---Intron---> CGLTVTVPMS
        ||||||||||||||||||||| <   8850bp   > ||/||||||/|||||||| ||| || |||||||||/| <   255bp    > | ||||/|||
Target  HWEKYNTGILFLPWGYDISQV                TISIVYIVTAIVGVEAWYRPFLLNFLYRDLFVAMIIG                CALTVTIPMS
        ctgataagactcctgtgaacg                aatagtagagagggggttcctccatctagttggaaag                tgcagaacaa
        agaaaacgttttcggaatgat                ctcttattccttgtacgagctttattagatttcttt                ggctctctctg
        cgggcccgcccgcggccccgg                ccccgcccgccgcggcgccgcggtctcgcgctggcc                ttgccgcccgc
                                                                                                            

Query   LLNYYK <---Intron---> AYKSKTLKHRSAYEALLPFLSPVLLFALCSAWIFWSPTDILEAHPRLFYFMVGTAFANIS <---Intron---> CR
        |||||| <   314bp    > |/ || ||||| || ||||||| ||| ||/||/| ||/||||  |||||||||||||||| <   554bp    > ||
Target  LLNYYK                AHASKMLKHRSLYEVLLPFLSPALLFGLCTAWVFLSPSDILEVQPRLFYFMVGTAFANIS                CR
        ccatta                gcgaaacacctctggccctctcgcctgctagtgtctctgacggcccctttaggagtgaat                tc
        ttaaaa                cacgattaagctaatttcttccctttgtgccgtttcccattatacgttatttgcctcatc                gg
        ggccc                accccggggccggcggggccgggggcccgcccgccggcgccgagggcccccgcggctcccc                cg
                                                                                                            

Query   LIVCQMSSTRCQPLNILLLPLALAILAVVSGVLAQQETLLLYLLTCLITAAHIHYGVSV <---Intron---> VSQLSQHFHIRTFSLRKPSSDULGV
        ||| ||||||||||| ||||||||/|||      / | ||| /||  || ||/|||||| <   1455bp   > | |||/||/|||||||||||||| |
Target  LIVSQMSSTRCQPLNWLLLPLALAVLAVPLQTRPEHEALLLSVLTGFITLAHVHYGVSV                VRQLSRHFNIRTFSLRKPSSDULDV
        cagtcaaaactcccatcccccgcggcggcccaccgcggccctgcagtaatgcgctggag                gcccacctaacattccacatgtcgg
        tttcatggcggactagtttctctcttctctacgcaaactttcttcgttctcataagtgt                tgatggatatgctctgacgcagtat
        gccgggccgccggccggggggcgccgccaggagggcgcggccgccccccggccccaccg                ggggcgcccccccggcgccctaacg
                                                                                                        *   

Query   EEAMAAGAEEKVALRSAEEL
        |   || ||| | ||||| |
Target  E---AASAEETVGLRSAEAL
        g---ggtgggaggcctgggc
        a---ccccaactgtgccact
        g---ggaagggccgtcaggg
                            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 832 ; UGA-SECIS: 892

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJPD01000126.1:subseq_901142,105541_ Strand = - Positions = 46843 - 46762
 Found by:  Infernal (score=26.33) Covels (score=16.72)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -16.77

         ..(((((((.......((((((((((.(((((...................))))).)))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC----cuuuuuggggcgggc-caggcCuGAUGuuu-uuucaugaccggc
         (({((((((.......([[[({(((({-((((...................))))-}))))})]]]).....-...))))))}))
 target  UUUCUGUGUGCUUGAAUGAAGAGUGCC-ACCUAAAGCCAAGAUUCUUGGAGAGGU-UGCACCCGGAAGAAAC-GGAGCGCAGCAG
                         ****            ^^^                            ****