_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-16
 Query name: gi|1033387958|ref|XP_008109147.2| PREDICTED: selenoprotein H [Anolis carolinensis]
 Query range: 1-136  (total 136)

 Target: /data/www-rg/seblastian_results/192765711/tempfiles/temptarget.fasta
 Chromosome: SJPD01000122.1:subseq_519175,100083_ Strand: -
 Positions:
 -Exon 1  53753        53901
 -Exon 2  52816        52961
 -Exon 3  49988        50085

 Redox box: YES

Query   MPPKKRKRKAEAPPSKASGSATVETENSGAEEKEMPKKLKPREGLGSLRVIIEHC <---Intron---> KSURVFGRNANAVSEALQQAFSEIVVEIN
        |||| |||||| | /||/ |   / /  |||  //||/||  || |   |||||| <   791bp    > ||||||||||/|||/|||||| / /||||
Target  MPPKGRKRKAERPQAKAAASNGEKPD--GAE--KLPKQLKKSEGSGP-HVIIEHC                KSURVFGRNADAVSQALQQAFPDALVEIN
        accagcaaaggaccgagggtaggacg--ggg--atcaccaaaggtgc-cgaagct                aatcgtgcaggggacgcccgtcggcggaa
        tccaggagacagcacaccccagaaca--gca--atcaataagagcgc-atttaag                agggttggacactgactaactcacttata
        gctagggggtagtgaataaccagaat--ttg--agcgagagtaagct-cgctgt                cacacgtccttttccgaaggcttttgggcc
                                                                                 *                          

Query   PEKPRRNTFEIVLVKEDGTK <---Intron---> AELWSGLKKGPPRKLKFPEPSKVVEVLKGNLD
        |||||||/||/ |/||||// <   2730bp   >  |||/|||||||||||||||/ |||/||||||
Target  PEKPRRNSFEVALLKEDGSR                VELWTGLKKGPPRKLKFPEPNNVVELLKGNLD
        cgaccaaatgggccagggta                ggttagcaagcccacatcgcaagggccagatg
        caacggagtatcttaaagc                gtatgcgtaagccgatatcacaattattagata
        tggacgtctggtgaagtct                agaagtctgagaacaggtaaattgtacggtcgt
                                                                            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 844 ; UGA-SECIS: 1078

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJPD01000122.1:subseq_519175,100083_ Strand = - Positions = 49143 - 49064
 Found by:  Infernal (score=23.15) Covels (score=21.85)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -10.69

         ..(((((((.......(((((((((((((((.................)))))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..((((({(---....([[{((((({(((((.................)))))})))))}]])........-...)})))))..
 target  GUUGGAGCA---UCCAUGAUGGGAUAUGAUUAAGUGGGGUUAAACUCCAGUCACAUCUCUGAAGCUACAGC-CCCUCCUCCACA
                         ****           ^^                          ****