________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-39
 Query name: gi|975108966|ref|XP_015270002.1| PREDICTED: glutathione peroxidase 2 isoform X1 [Gekko japonicus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/335948502/tempfiles/temptarget.fasta
 Chromosome: SJPD01000040.1:subseq_876636,103553_ Strand: +
 Positions:
 -Exon 1  49985        50206
 -Exon 2  53215        53562

 Redox box: no

Query   MTPVAKSFYDLSATDLHGEKVDFNNFRGRVVLIENVASLUGTAVRDYTHMNQLQSKYPRRLIVLGFPCNQFGYQ <---Intron---> ENCTNEEILN
        |||/|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||/|/|||||||||| <   3008bp   > ||||||||||
Target  MTPIAKSFYDLSATDLQGEKVDFNNFRGRVVLIENVASLUGTTVRDYTQMNQLQSKYPRRLVVVGFPCNQFGYQ                ENCTNEEILN
        aacagatttgcagagccggaggtaatagaggtagaggtctgaagcgtacaacccaatccccggggtctactgtc                gataaggaca
        tcctcactaatgccatagaatataatgggttttaatcctggcctgaacataatagaacggttttgtcgaatgaa                aagcaaatta
        gtcacaccttctctccaggagtcctcggagcgagcgcccacaaggcccggcgggcattaggtcgtctccgtccg                gccataatcc
                                               *                                                            

Query   SLKYVRPGSAFEPNFILCQKCEVNGKNTHSVFAYLKDKLPYPDDNPSCLMMEPKFIIWSPVYRNDISWNFEKFLVGPEGEPFKRYSPRFLTTNIEPDIQR
        ||||||||| |||||||||||||||||||||||||||||||||||||||/|||||| ||||/||||||||||||||||||||||||||/|||| ||||||
Target  SLKYVRPGSGFEPNFILCQKCEVNGKNTHSVFAYLKDKLPYPDDNPSCLLMEPKFITWSPVHRNDISWNFEKFLVGPEGEPFKRYSPRYLTTNTEPDIQR
        atatgccgtgtgcatactcatggagaaactgtgtcagacctcggacttccagcataatacgccagattatgatcggcgggctactacatcaaaagcgacc
        gtaatgcgcgtacatttgaagatagaacacttcataaatcacaaaccgtttacattcggctagaatcgataatttgcagactagagcgatccacacatag
        cgacgttgtataccctccgatggtcgccttctctggcattcatccccccgggcgccagcatcccctcgttggcggacaagccgtcccacccccagtctgt
                                                                                                            

Query   LLKLAK
        ||||||
Target  LLKLAK
        ctacga
        ttatca
        cggtca
              
 Sequence until next stop: 
TAA
 * 


 Distance CDS-SECIS: 221 ; UGA-SECIS: 671

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = SJPD01000040.1:subseq_876636,103553_ Strand = + Positions = 53784 - 53848
 Found by:  Infernal (score=21.92) Covels (score=14.42)
 Stem2 length = 10   Apical loop length = 8   Insertion in stem2 = 0, 1
 Free Energy = -24.3

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         .((((((((---....([[((((((({((((.....--.-----..))))})))).)))]])----....)))))))).
 target  GACCUUUAC---UGAGUGAGGGUGCCCUCUUAAAGC--U-----CAGAGGAGGCGGCCUGAG----AAAUGUAAAGGUG
                         ****           ^^^                        ****