------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJPD01000003.1:subseq_39278645,112583_ Strand = - Positions = 43734 - 43660
 Found by:  Infernal (score=26.04) Covels (score=28.47)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -20.07

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((.--....{[[{(({(((((((..................)))))))}))}]]}..--....)))))))))
 target  UACUGGUGUC--UUCAUGAAGACCACUGACAAAAGAGUGCCUCACUCAGUUGGUGUUCAGAUGC--UCUUGCACCAGUA
                         ****          ^^^                         ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = SJPD01000003.1:subseq_39278645,112583_ Strand = + Positions = 5157 - 5230
 Found by:  Infernal (score=12.33) Covels (score=10.17)
 Stem2 length = 8   Apical loop length = 13   Insertion in stem2 = 2, 0
 Free Energy = -10.54

         ..(((((((...........((((((((((.((..(((................))))).))))))))))........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccug-gc--ccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .((({(((((..........([[((((((({--..((..........-----...))--})))))))]])----...)))))}))).
 target  UUGAUGACUGCGGCAUCAAAUGAUGACUACA--ACCUCAAAUGAUGU-----GAAAG--AGUAGUCAGAG----ACACAGUUCUCAU
                             ****              ^^^                         ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = SJPD01000003.1:subseq_39278645,112583_ Strand = - Positions = 13215 - 13138
 Found by:  Infernal (score=10.59) Covels (score=4.2)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 1, 0
 Free Energy = -5.47

         ..(((((((........((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((({((........([[((({(((.((((.................)))))))})))]])..--....))})))...
 target  GUCUCGGCUGAUACCAAUGAUGUCUGGGGGUCCCCCCCUUUAUAGUACUGGCUUCAAAUGGAGGA--CAGAAGGCGAAUC
                          ****           ^^                         ****