
genewise output
Score 711.44 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000036_1.0  193 VKELFSSLGVECNVLELDQV                          DGA 
                     VK+LFSS+GV   VLELDQ+                           G  
                     VKDLFSSMGVSYFVLELDQI          D:E[gag]        HGQ 
ULFR01000001.1:23125 gagctataggtttgcgcgcaGGTAAGAT  Intron 1   CAGAGcgc 
                     taattgctgtcatttataat <1-----[23186:36728]-1>  aga 
                     ggtgcccgttttcttatcat                          tga 


SPP00000036_1.0  217 RVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQ                 
                     +++  L E+T + ++P +F  K +VGG D+T +                 
                     QLRNALFELTMEPSLPAVFARKQYVGGYDRTVK                 
ULFR01000001.1:36740 ccaagctgcaagcttcggtgcactgggtgcaga                 
                     atgacttatctacctccttcgaaatggaagcta                 
                     aggcgctacgggtcgtcgtcaggcaccccgggg                 


SPP00000036_1.0  250                        AYQSGLLQKLLQ-----EDLAYDYDL 
                                            A++ G   KLL+        +YDYDL 
                                            AHREGAFLKLLEGNWQTKQASYDYDL 
ULFR01000001.1:36839 GTAGGGA  Intron 2   CAGgccgggtcaccggatcaacgttgtgc 
                     <0-----[36839:43738]-0>cagagcttattagagacaaccaaaat 
                                            actaatttaataacgagagtatcttg 


SPP00000036_1.0  271 IIIGGGSGGLSCAK                       EAAILGKKVMVL 
                     I+IGGGSGGL+ +K                       EAA  GK V+VL 
                     IVIGGGSGGLAASK                       EAATFGKNVLVL 
ULFR01000001.1:43817 agagggtggcggtaGTAAGAT  Intron 3   TAGgggatgaagtgc 
                     tttgggcggtccca<0-----[43859:49220]-0>accctgaatttt 
                     tctaatttagatag                       aacatcgtagtg 


SPP00000036_1.0  297 DFVVPSPQGTSW                          LGGTCVNVGCI 
                     DFVVP+P GT+W                          LGGTCVNVGCI 
                     DFVVPTPLGTTW          G:G[ggt]        LGGTCVNVGCI 
ULFR01000001.1:49257 gtggcactgaatGGTAAGTT  Intron 4   CAGGTcggatgaggta 
                     atttccctgccg <1-----[49294:50000]-1>  tggcgtatggt 
                     ttcctttaaaag                          taattataccc 


SPP00000036_1.0  321 PKKLMHQAALLGQALCDSRKFGWEYNQQ                      
                     PKKLMHQ ALLGQA+ D+  FGW+   +                      
                     PKKLMHQTALLGQAIKDAPAFGWQLGDK          -:P[ccc]    
ULFR01000001.1:50036 caacaccagtcgcgaaggcgtgtccggaCGTAAGGA  Intron 5    
                     caattaaccttgactaaccctggatgaa <1-----[50121:50694] 
                     tagggcgatgtgaccatatatggggtca                      


SPP00000036_1.0  349      VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEH 
                          ++H+W ++T+A+QNHI SLNWGYR++LREK V Y N+YGEF+   
                          IKHSWSSLTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFIGP 
ULFR01000001.1:50692 TAGCCaacatattagggcacagtcatgtaggccgaagatgagtggtagc 
                     -1>  taagggctcactaaatgctaggagtctgaaatcaaacagattgc 
                          agccgctgaattgtctctgtgacagccagagcatattcagctaa 


SPP00000036_1.0  393 HKIK                       ATNKKGQETYYTAAQFVIATGE 
                     H IK                        TN KG E  YTA +F+IATGE 
                     HTIK                       TTNNKGVEKIYTAERFLIATGE 
ULFR01000001.1:50829 caaaGTACTAG  Intron 6   CAGaaaaagggaataggatcagagg 
                     acta<0-----[50841:52990]-0>ccaaagtaataccagtttccga 
                     catg                       aattaaagatcaaaatgtctaa 


SPP00000036_1.0  419 RPRYLGIQGDKEYCIT                          DDLFSLP 
                     RPRYL I GDKEYCIT                          DDLFSLP 
                     RPRYLNIPGDKEYCIT           S:S[agt]       DDLFSLP 
ULFR01000001.1:53057 acctcaacggagttaaAGGTAACAT  Intron 7   CAGTggcttcc 
                     gcgatatcgaaaagtc  <2-----[53107:55296]-2> aattctc 
                     atctcctaacaatccc                          tcgcagt 


SPP00000036_1.0  443 YCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKV 
                     YCPGKTLVVGASYVALECAGFLAG+GLDVTVMVRSILLRGFDQ+MA K+ 
                     YCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANKI 
ULFR01000001.1:55319 ttcgaatggggttggcgtggtcggcgtggagagctaccagtgcgagaaa 
                     agcgactttgccatctagcgttcgtgtatctttgctttggtaaatcaat 
                     ccaaaaggtattctttattatttgttatgtcggcctcggcttgtgataa 


SPP00000036_1.0  492 GSYMEQHGVKFLRKFIPVM                       VQQLEKG 
                     G +ME+HGVKF+RK++P                         ++Q++KG 
                     GEHMEEHGVKFIRKYVPTK                       IEQIKKG 
ULFR01000001.1:55466 ggcaggcggataaatgcaaGTAAGGC  Intron 8   CAGagcaaag 
                     gaataaagtattgaatcca<0-----[55523:57245]-0>taataag 
                     aatgagtttgcaaatgcag                       tagtgaa 


SPP00000036_1.0  518 SPGKLKVLAKSTEGTETIEGVYNT                       VL 
                     +PG LKV A++TE +ETIEG YNT                       V+ 
                     TPGLLKVTAQATENSETIEGEYNT                       VM 
ULFR01000001.1:57267 acgccagagcgagatgaagggtaaGTAAGTA  Intron 9   CAGga 
                     ccgttatccaccaacactagaaac<0-----[57339:58375]-0>tt 
                     ttaaaatatgtagctaataaacca                       gg 


SPP00000036_1.0  544 LAIGRDSCTRKIGLEKIGVKINE                           
                     LAIGRD+CT+KIGL+K+GV+INE                           
                     LAIGRDACTKKIGLQKVGVRINE           K:N[aat]        
ULFR01000001.1:58382 cgagaggtaaaagccagggaaagAAGTAAGGC  Intron 10  TAGT 
                     tctggacgcaatgtaatgtgtaa  <2-----[58453:59120]-2>  
                     aaaaatccaaatcagataggcta                           


SPP00000036_1.0  568 SGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGAS 
                     +GKIPVND EQTNVPY+YA+GD+LE KPELTPVAIQ+G+LL +RL+  + 
                     TGKIPVNDKEQTNVPYIYAIGDVLEGKPELTPVAIQAGRLLVRRLYDGA 
ULFR01000001.1:59122 agaacgagagcaagctatgagggcggacgcacggacggattgaactggg 
                     cgatctaaaaacatcatactgattagacatcctctacggtttggtaagc 
                     aaactttcgaaacgtcctttattggcaaacccgatggaggggggtttaa 


SPP00000036_1.0  617 LEK                       CDYINVPTTVFTPLEYGCCGLSE 
                       K                       CDYINVPTTVFTPLEYG CG SE 
                     FTK                       CDYINVPTTVFTPLEYGACGYSE 
ULFR01000001.1:59269 taaGTAAATC  Intron 11  CAGtgtaagcaagtactgtggtgttg 
                     tca<0-----[59278:59659]-0>gaatatcccttcctaagcggaca 
                     cag                       tttaccctaacatgatactttaa 


SPP00000036_1.0  643 EKAIEVYKKENLE                       IYHTLFWPLEWTV 
                     EKAIE +    +E                       +YH+ FWPLEWTV 
                     EKAIERFGNNRIE                       VYHSYFWPLEWTV 
ULFR01000001.1:59729 gagagatgaaaagGTATTTT  Intron 12  CAGgtcatttccgtag 
                     aactagtgaagta<0-----[59768:61257]-0>taagatgctagct 
                     aaataatcttgtg                       tcctccgagggac 


SPP00000036_1.0  669 AGRENNTCYAKIICNKFDH                       DRVIGFH 
                       R+NN CYAKIICN  D                        +RVIGFH 
                     PSRDNNRCYAKIICNLADR                       NRVIGFH 
ULFR01000001.1:61297 ctcgaaattgaaatacggaGTATGCC  Intron 13  TAGacgagtc 
                     ccgaaaggacattgatcag<0-----[61354:63192]-0>agttgta 
                     acgcccactaattcttatg                       tatttct 


SPP00000036_1.0  695 ILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE            
                     +LGPNAGE+TQGFAAA+KCG+ K  LD TIGIHP C E            
                     VLGPNAGEITQGFAAAIKCGIRKDQLDSTIGIHPVCAE            
ULFR01000001.1:63214 gcgcagggaacgtgggaatgaaagctgaaagaccgtgg            
                     ttgcacgatcagtccctaggtgaaatagctgtactgca            
                     gttcttaatcgataaccataagacagccaaactactgg            


SPP00000036_1.0  733                        VFTTLEITKSSGLDITQKGC       
                                            +FTTL +TK SG ++ Q GC       
                                            IFTTLSVTKRSGENVAQSGC       
ULFR01000001.1:63328 GTGGGTA  Intron 14  TAGataattgaactggaggctgt       
                     <0-----[63328:67357]-0>ttcctctcagcgaatcacgg       
                                            actagggagcttatttgtac       


//
Making a E in phase 1 intron
Making a G in phase 1 intron
Making a P in phase 1 intron
Making a S in phase 2 intron
Making a N in phase 2 intron
>ULFR01000001.1:subseq(15956652,113330).pep
VKDLFSSMGVSYFVLELDQIEHGQQLRNALFELTMEPSLPAVFARKQYVGGYDRTVKAHR
EGAFLKLLEGNWQTKQASYDYDLIVIGGGSGGLAASKEAATFGKNVLVLDFVVPTPLGTT
WGLGGTCVNVGCIPKKLMHQTALLGQAIKDAPAFGWQLGDKPIKHSWSSLTEAVQNHIGS
LNWGYRVALREKKVTYENAYGEFIGPHTIKTTNNKGVEKIYTAERFLIATGERPRYLNIP
GDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQD
MANKIGEHMEEHGVKFIRKYVPTKIEQIKKGTPGLLKVTAQATENSETIEGEYNTVMLAI
GRDACTKKIGLQKVGVRINENTGKIPVNDKEQTNVPYIYAIGDVLEGKPELTPVAIQAGR
LLVRRLYDGAFTKCDYINVPTTVFTPLEYGACGYSEEKAIERFGNNRIEVYHSYFWPLEW
TVPSRDNNRCYAKIICNLADRNRVIGFHVLGPNAGEITQGFAAAIKCGIRKDQLDSTIGI
HPVCAEIFTTLSVTKRSGENVAQSGC
//
>ULFR01000001.1:subseq(15956652,113330).[23125:67417].sp
GTGAAGGATCTGTTCAGCTCCATGGGTGTTTCTTATTTCGTTCTTGAACTTGACCAAATT
GAGCATGGGCAACAACTGAGGAACGCGCTCTTTGAACTCACGATGGAGCCTTCCTTGCCT
GCCGTGTTTGCCCGAAAGCAGTACGTAGGCGGCTACGACCGGACGGTGAAGGCACACCGT
GAAGGAGCTTTTCTTAAACTACTTGAAGGAAACTGGCAAACGAAACAGGCTTCATATGAC
TATGATCTGATTGTCATTGGAGGAGGTTCTGGTGGACTGGCAGCTTCAAAGGAAGCAGCC
ACATTTGGCAAGAATGTATTGGTTCTGGATTTTGTCGTCCCTACTCCTTTAGGAACAACA
TGGGGTCTTGGAGGAACTTGTGTAAATGTAGGCTGCATCCCTAAAAAGCTGATGCACCAG
ACAGCTTTGCTTGGGCAAGCCATCAAAGATGCACCTGCATTTGGGTGGCAGCTGGGTGAC
AAACCCATAAAGCACAGCTGGAGCTCTTTGACAGAAGCTGTTCAGAATCACATTGGCTCT
CTGAATTGGGGATACAGAGTGGCCCTCCGAGAGAAAAAGGTCACATATGAAAATGCTTAC
GGAGAGTTCATTGGACCACACACAATTAAGACAACAAATAATAAAGGAGTAGAGAAAATT
TACACAGCAGAAAGATTTCTGATTGCCACTGGAGAAAGACCTCGCTATCTCAACATTCCA
GGAGACAAAGAATATTGCATCACCAGTGATGACCTGTTCTCACTGCCTTACTGCCCAGGA
AAAACATTGGTGGTTGGAGCTTCTTACGTTGCTCTTGAATGTGCTGGATTTCTTGCTGGG
CTTGGTTTAGATGTGACTGTCATGGTGCGCTCCATTCTCCTGAGGGGCTTTGATCAGGAT
ATGGCAAATAAAATAGGAGAACATATGGAAGAGCATGGTGTTAAGTTCATAAGAAAATAT
GTGCCCACAAAGATTGAACAGATTAAGAAAGGAACTCCTGGACTACTAAAAGTTACAGCT
CAGGCTACAGAGAACTCTGAAACAATTGAAGGAGAATACAACACAGTGATGCTAGCAATA
GGAAGAGATGCCTGCACAAAAAAAATTGGCCTACAGAAAGTTGGAGTGAGGATCAATGAA
AATACAGGAAAAATCCCTGTTAATGACAAGGAACAAACAAACGTGCCTTACATCTATGCT
ATTGGAGATGTTCTGGAGGGCAAACCAGAACTCACCCCCGTGGCAATTCAGGCGGGAAGG
TTGTTGGTGAGGAGGCTTTATGATGGAGCATTCACAAAGTGTGATTATATAAACGTCCCC
ACTACAGTATTCACACCTTTGGAATATGGAGCCTGTGGTTATTCAGAAGAAAAAGCAATT
GAAAGATTTGGCAATAATAGGATTGAGGTTTACCACAGTTACTTCTGGCCACTGGAGTGG
ACAGTCCCATCCCGGGACAACAACAGATGCTATGCAAAAATTATTTGCAATCTTGCAGAT
AGGAATCGAGTTATTGGTTTCCATGTGCTTGGTCCCAATGCTGGAGAAATTACCCAGGGA
TTTGCAGCAGCCATCAAATGTGGAATAAGGAAAGACCAATTGGACAGCACAATAGGAATC
CATCCAGTCTGTGCGGAGATATTCACTACATTGTCGGTGACAAAGCGCTCTGGTGAAAAT
GTTGCTCAGTCTGGATGC
//
ULFR01000001.1:subseq(15956652,113330)	GeneWise	match	23125	67417	715.44	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	23125	23185	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	23186	36728	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	36729	36838	0.00	+	2	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	36839	43738	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	43739	43858	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	43859	49220	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	49221	49293	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	49294	50000	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	50001	50120	0.00	+	2	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	50121	50694	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	50695	50840	0.00	+	2	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	50841	52990	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	52991	53106	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	53107	55296	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	55297	55522	0.00	+	1	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	55523	57245	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	57246	57338	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	57339	58375	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	58376	58452	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	58453	59120	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	59121	59277	0.00	+	1	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	59278	59659	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	59660	59767	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	59768	61257	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	61258	61353	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	61354	63192	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	63193	63327	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	intron	63328	67357	0.00	+	.	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113330)	GeneWise	cds	67358	67417	0.00	+	0	ULFR01000001.1:subseq(15956652,113330)-genewise-prediction-1
//
