
genewise output
Score 705.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000034_1.0    2 NGPEDLPKSYDYDLIIIGGGSGGLAAAK                      
                     NG  +  +SYDYDLIIIGGGSGGLA +K                      
                     NGKCEEMESYDYDLIIIGGGSGGLACSK                      
ULFR01000004.1-61759 agatggagttgtgcaaagggtggcgttaGTACGTA  Intron 1     
                     agagaatacaaaattttgggcggtcgca<0-----[61675:59099]  
                     tagtaggaatttcattttttttatttcg                      


SPP00000034_1.0   30    EAAQYGKKVMVLDFVTPTPLGTRW                       
                        EAA  GKKVMVLD+V PTPLGT W                       
                        EAATLGKKVMVLDYVVPTPLGTTW          G:G[ggg]     
ULFR01000004.1-59101 CAGgggatgaagagtgtggcactgaatGGTATGTT  Intron 2     
                     -0>accctgaattttaattccctgccg <1-----[59025:57992]  
                        atccagggcgtatctgaaagttag                       


SPP00000034_1.0   54      LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET      
                          LGGTCVNVGCIPKKLMHQAALLGQALQDSR +GW+ ++       
                          LGGTCVNVGCIPKKLMHQAALLGQALQDSRRFGWEYDQQ      
ULFR01000004.1-57994 CAGGGcggatgaggtacaataccggttgcgccgtaatgtgtgcc      
                     -1>  tggcgtatggtcaattaaccttgactaacggtggaaaaa      
                          ttttcattccttagggtaataatgagataagtcggttga      


SPP00000034_1.0   94                           KHDWDRMIEAVQNHIGSLNWGYR 
                                               KH+W+ M+E +QN+IGSLNWGYR 
                               V:V[gtt]        KHNWETMVEGIQNYIGSLNWGYR 
ULFR01000004.1-57872 GGTTTGTG  Intron 3   CAGTTacatgaagggacatagttatgtc 
                      <1-----[57871:56952]-1>  aaagacttagtaaatgctaggag 
                                               actgacgtaatatcagtatgctg 


SPP00000034_1.0  118 VALREKKVVYENAYGQFIGPHRIK                       AT 
                     VALREK V Y NAYG+FIGPH++K                       A  
                     VALREKTVTYLNAYGEFIGPHKVK                       AI 
ULFR01000004.1-56880 ggtcgaagatcagtggtagccagaGTACTTG  Intron 4   AAGga 
                     tctgaactcatacagattgcaata<0-----[56808:53760]-0>ct 
                     gtatggtgacttgtaattaatacg                       ac 


SPP00000034_1.0  144 NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS              
                     N KG+E +Y+AE F+IATGERPRYLGIPGDKEYCI+              
                     NRKGQETFYTAETFVIATGERPRYLGIPGDKEYCIT              
ULFR01000004.1-53753 aaagcgattaggatgagaggaccttgacggagttaa              
                     agagaactaccactttccgagcgatgtcgaaaagtc              
                     caaaaatctaagattttcaaagatgtcaataattcg              


SPP00000034_1.0  180                           DDLFSLPYCPGKTLVVGASYVAL 
                                               DDLFSLPYCPG+TLVVGASYVAL 
                                S:S[agt]       DDLFSLPYCPGRTLVVGASYVAL 
ULFR01000004.1-53645 AGGTCAGTT  Intron 5   CAGTggcttccttcgaatggggttggt 
                       <2-----[53643:53552]-2> aattctcagcggctttgccatct 
                                               tcctccctctagtatgacctata 


SPP00000034_1.0  204 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV 
                     ECAGFLA +GLDVTVMVRSILLRGFDQ+MA K G +ME HG+KFIR+FV 
                     ECAGFLASLGLDVTVMVRSILLRGFDQEMAEKAGAYMETHGVKFIRKFV 
ULFR01000004.1-53481 gtggtcgacgtggagagctacccgtgcgaggagggtagacggatacatg 
                     agcgttcgtgtatctttgctttggtaaatcaacgcatacagtattgatt 
                     ataattgcttgtcttggcactttcttaagagaatccgaataaaccaatt 


SPP00000034_1.0  253 PIK---                       VEQIEAGTPGRLRVVAQSTN 
                     PI+                          + ++E G PG+L+V+A+ST  
                     PIEASI                       IIKLEDGMPGKLKVIAKSTE 
ULFR01000004.1-53334 caggaaGTTCAGT  Intron 6   CAGaaacgggacgacagagatag 
                     ctacgt<0-----[53316:53162]-0>ttataagtcgatattcacca 
                     ttgatt                       tagggtcgcaacaataacta 


SPP00000034_1.0  276 SEEIIEGEYNT                       VMLAIGRDACTRKIG 
                       ++IEGEYNT                       V++A+GRDACTR IG 
                     GSQVIEGEYNT                       VLIAVGRDACTRTIG 
ULFR01000004.1-53101 gtcgagggtaaGTAAGAC  Intron 7   TAGgtagggcggtaaaag 
                     gcattagaaac<0-----[53068:52775]-0>tttctggacgcgctg 
                     aaaataaatct                       tgattccttccgttc 


SPP00000034_1.0  302 LETVGVKINE                          TGKIPVTDEEQTN 
                     L+ +GVK+NE                           GKIPV DEEQTN 
                     LDKIGVKMNE           K:N[aat]       NGKIPVNDEEQTN 
ULFR01000004.1-52729 tgaaggaaagAAGTAAGTA  Intron 8   AAGTagaacgagggcaa 
                     taatgtataa  <2-----[52697:52212]-2> agatctaaaaaca 
                     gtattgagta                          tgaatgttaaact 


SPP00000034_1.0  326 VPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK           
                     VPY+YAIGDILE K+ELTPVAIQAG+LLA+RL+ GS+VK           
                     VPYVYAIGDILEGKLELTPVAIQAGKLLARRLFGGSSVK           
ULFR01000004.1-52171 gctgtgaggatggacgcacggacggactgcactggatga           
                     tcatactgattagatatcctctacgattcggttgggcta           
                     attctgtgttgaaggataatcagacgaatcgttaattag           


SPP00000034_1.0  365                        CDYENVPTTVFTPLEYGACGLSEEKA 
                                            CDY NVPTTVFTPLEYG CG  EEKA 
                                            CDYINVPTTVFTPLEYGCCGFPEEKA 
ULFR01000004.1-52054 GTAAATG  Intron 9   TAGtgtaagcaagtactgtgttgtcggag 
                     <0-----[52054:51178]-0>gaatatcccttcctaaggggtcaaac 
                                            tttttgatagtatgattttccaaaat 


SPP00000034_1.0  391 VEKFGEENIE                       VYHSYFWPLEWTIPSR 
                     +E FG+ENIE                       VYH+YFWPLEWTIP+R 
                     IELFGQENIE                       VYHTYFWPLEWTIPNR 
ULFR01000004.1-51099 agctgcgaagGTACATT  Intron 10  CAGgtcatttccgtaacaa 
                     tattgaaata<0-----[51069:50856]-0>taacatgctagctcag 
                     taataaatag                       atctccgatagaaata 


SPP00000034_1.0  417 DNNKCYAKIICNTKDN                       ERVVGFHVLG 
                     DNN CYAKIICN  ++                        RV+G+HVLG 
                     DNNTCYAKIICNKLND                       NRVIGLHVLG 
ULFR01000004.1-50807 gaaattgaaataacagGTATGTA  Intron 11  TAGacgagtcgcg 
                     aaacgacattgaataa<0-----[50759:50141]-0>agttgtattg 
                     cctcttaaacctgtct                       ctctaatata 


SPP00000034_1.0  443 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE               
                     PNAGE+TQGF AA+KCG+TK+ LD TIGIHP  AE               
                     PNAGEITQGFGAAMKCGITKELLDDTIGIHPTSAE               
ULFR01000004.1-50110 cagggaacgtgggaatgaaagtcggaagaccaagg               
                     cacgatcagtgcctaggtcaattaactgtaccgca               
                     tttgaacgttgaagattcaaaattcatcatattag               


SPP00000034_1.0  478                        VFTTLSVTKRSGASILQAGC       
                                            VFTT+ +TK SG  I Q+GC       
                                            VFTTMEITKSSGKDISQSGC       
ULFR01000004.1-50005 GTAATAA  Intron 12  CAGgtaaagaaattgagaacagt       
                     <0-----[50005:48985]-0>ttcctatcaccgaatgaggg       
                                            actagaacataaatctgttc       


//
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a N in phase 2 intron
>ULFR01000004.1:subseq(21529488,107992).pep
NGKCEEMESYDYDLIIIGGGSGGLACSKEAATLGKKVMVLDYVVPTPLGTTWGLGGTCVN
VGCIPKKLMHQAALLGQALQDSRRFGWEYDQQVKHNWETMVEGIQNYIGSLNWGYRVALR
EKTVTYLNAYGEFIGPHKVKAINRKGQETFYTAETFVIATGERPRYLGIPGDKEYCITSD
DLFSLPYCPGRTLVVGASYVALECAGFLASLGLDVTVMVRSILLRGFDQEMAEKAGAYME
THGVKFIRKFVPIEASIIIKLEDGMPGKLKVIAKSTEGSQVIEGEYNTVLIAVGRDACTR
TIGLDKIGVKMNENNGKIPVNDEEQTNVPYVYAIGDILEGKLELTPVAIQAGKLLARRLF
GGSSVKCDYINVPTTVFTPLEYGCCGFPEEKAIELFGQENIEVYHTYFWPLEWTIPNRDN
NTCYAKIICNKLNDNRVIGLHVLGPNAGEITQGFGAAMKCGITKELLDDTIGIHPTSAEV
FTTMEITKSSGKDISQSGC
//
>ULFR01000004.1:subseq(21529488,107992).[61759:48923].sp
AATGGAAAGTGTGAAGAGATGGAATCATATGATTATGACCTAATTATTATTGGTGGTGGT
TCTGGTGGACTTGCTTGTTCCAAGGAAGCTGCCACCTTAGGGAAGAAGGTCATGGTTTTA
GATTACGTTGTGCCAACACCATTGGGTACTACATGGGGGCTTGGTGGTACTTGCGTAAAT
GTTGGCTGCATTCCTAAAAAGTTGATGCATCAAGCAGCTTTATTAGGTCAGGCACTGCAA
GATTCAAGAAGGTTTGGCTGGGAGTATGATCAGCAAGTTAAACACAATTGGGAAACCATG
GTTGAAGGAATTCAAAATTACATAGGGTCTTTAAATTGGGGCTATCGGGTGGCTTTACGT
GAGAAGACTGTGACATACCTTAATGCGTATGGAGAATTTATTGGACCACATAAAGTCAAG
GCAATCAACAGAAAAGGACAAGAAACTTTCTATACAGCAGAGACATTTGTTATTGCTACC
GGAGAAAGACCGCGATATTTGGGTATCCCAGGAGATAAAGAATATTGTATCACGAGTGAT
GACCTCTTTTCCCTCCCCTATTGCCCTGGAAGGACTTTAGTTGTGGGAGCCTCCTATGTA
GCTTTAGAATGTGCAGGATTTCTTGCGAGCCTTGGTTTGGATGTCACTGTTATGGTGCGC
TCAATCCTTCTTCGTGGCTTTGATCAAGAAATGGCAGAGAAAGCAGGTGCCTACATGGAA
ACACATGGAGTAAAATTCATCCGAAAATTTGTTCCTATTGAGGCAAGTATTATTATAAAG
CTGGAGGATGGCATGCCCGGAAAACTCAAAGTAATTGCAAAATCCACTGAAGGATCACAA
GTAATTGAAGGAGAATATAACACTGTTTTGATAGCTGTTGGCCGCGATGCTTGCACCAGG
ACTATTGGCTTGGATAAAATTGGTGTGAAAATGAATGAAAATAATGGGAAAATACCTGTG
AATGATGAAGAACAAACCAATGTACCTTATGTCTATGCGATTGGGGATATTTTGGAAGGA
AAGCTGGAACTTACACCAGTTGCCATACAGGCAGGCAAGCTATTAGCTCGCAGGCTTTTT
GGAGGAAGTTCTGTAAAGTGTGATTATATTAATGTGCCAACTACAGTGTTTACACCTTTG
GAATATGGTTGTTGTGGCTTCCCAGAAGAAAAAGCTATTGAACTATTTGGACAAGAAAAT
ATAGAGGTATATCACACTTACTTCTGGCCACTTGAATGGACAATACCAAATAGAGACAAC
AATACCTGTTATGCAAAAATAATCTGCAATAAGCTTAACGATAACCGTGTCATTGGATTA
CATGTACTTGGACCTAATGCTGGGGAAATAACCCAGGGTTTTGGGGCAGCAATGAAATGT
GGTATCACAAAAGAATTACTTGATGACACAATTGGCATACATCCAACTAGTGCAGAGGTA
TTCACTACAATGGAAATAACCAAATCTTCAGGAAAAGATATCAGTCAGAGTGGTTGC
//
ULFR01000004.1:subseq(21529488,107992)	GeneWise	match	61759	48925	707.85	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	61759	61676	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	61675	59099	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	59098	59026	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	59025	57992	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	57991	57872	0.00	-	2	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	57871	56952	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	56951	56809	0.00	-	2	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	56808	53760	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	53759	53644	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	53643	53552	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	53551	53317	0.00	-	1	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	53316	53162	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	53161	53069	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	53068	52775	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	52774	52698	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	52697	52212	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	52211	52055	0.00	-	1	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	52054	51178	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	51177	51070	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	51069	50856	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	50855	50760	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	50759	50141	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	50140	50006	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	intron	50005	48985	0.00	-	.	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
ULFR01000004.1:subseq(21529488,107992)	GeneWise	cds	48984	48925	0.00	-	0	ULFR01000004.1:subseq(21529488,107992)-genewise-prediction-1
//
