
genewise output
Score 785.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000034_1.0   10 SYDYDLIIIGGGSGGLAAAK                       EAAQYG 
                     SYDYDLI+IGGGSGGLAA+K                       EAA +G 
                     SYDYDLIVIGGGSGGLAASK                       EAATFG 
ULFR01000001.1:43799 ttgtgcagagggtggcggtaGTAAGAT  Intron 1   TAGgggatg 
                     caaaattttgggcggtccca<0-----[43859:49220]-0>accctg 
                     atcttgtctaatttagatag                       aacatc 


SPP00000034_1.0   36 KKVMVLDFVTPTPLGTRW                          LGGTC 
                     K V+VLDFV PTPLGT W                          LGGTC 
                     KNVLVLDFVVPTPLGTTW          G:G[ggt]        LGGTC 
ULFR01000001.1:49239 aagtgcgtggcactgaatGGTAAGTT  Intron 2   CAGGTcggat 
                     aattttatttccctgccg <1-----[49294:50000]-1>  tggcg 
                     gtagtgttcctttaaaag                          taatt 


SPP00000034_1.0   60 VNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET                
                     VNVGCIPKKLMHQ ALLGQA++D+  +GW++ +                 
                     VNVGCIPKKLMHQTALLGQAIKDAPAFGWQLGDK                
ULFR01000001.1:50018 gaggtacaacaccagtcgcgaaggcgtgtccgga                
                     tatggtcaattaaccttgactaaccctggatgaa                
                     ataccctagggcgatgtgaccatatatggggtca                


SPP00000034_1.0   94                           VKHDWDRMIEAVQNHIGSLNWGY 
                                               +KH W  + EAVQNHIGSLNWGY 
                               -:P[ccc]        IKHSWSSLTEAVQNHIGSLNWGY 
ULFR01000001.1:50120 CGTAAGGA  Intron 3   TAGCCaacatattagggcacagtcatgt 
                      <1-----[50121:50694]-1>  taagggctcactaaatgctagga 
                                               agccgctgaattgtctctgtgac 


SPP00000034_1.0  117 RVALREKKVVYENAYGQFIGPHRIK                       A 
                     RVALREKKV YENAYG+FIGPH IK                         
                     RVALREKKVTYENAYGEFIGPHTIK                       T 
ULFR01000001.1:50766 aggccgaagatgagtggtagccaaaGTACTAG  Intron 4   CAGa 
                     gtctgaaatcaaacagattgcacta<0-----[50841:52990]-0>c 
                     agccagagcatattcagctaacatg                       a 


SPP00000034_1.0  143 TNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS             
                     TNNKG EKIY+AERFLIATGERPRYL IPGDKEYCI+             
                     TNNKGVEKIYTAERFLIATGERPRYLNIPGDKEYCIT             
ULFR01000001.1:52994 aaaagggaataggatcagaggacctcaacggagttaa             
                     caaagtaataccagtttccgagcgatatcgaaaagtc             
                     attaaagatcaaaatgtctaaatctcctaacaatccc             


SPP00000034_1.0  180                           DDLFSLPYCPGKTLVVGASYVAL 
                                               DDLFSLPYCPGKTLVVGASYVAL 
                                S:S[agt]       DDLFSLPYCPGKTLVVGASYVAL 
ULFR01000001.1:53105 AGGTAACAT  Intron 5   CAGTggcttccttcgaatggggttggc 
                       <2-----[53107:55296]-2> aattctcagcgactttgccatct 
                                               tcgcagtccaaaaggtattcttt 


SPP00000034_1.0  204 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV 
                     ECAGFLAG+GLDVTVMVRSILLRGFDQDMANKIGEHMEEHG+KFIR++V 
                     ECAGFLAGLGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGVKFIRKYV 
ULFR01000001.1:55367 gtggtcggcgtggagagctaccagtgcgagaaaggcaggcggataaatg 
                     agcgttcgtgtatctttgctttggtaaatcaatgaataaagtattgaat 
                     attatttgttatgtcggcctcggcttgtgataaaatgagtttgcaaatg 


SPP00000034_1.0  253 PIK                       VEQIEAGTPGRLRVVAQSTNSEE 
                     P K                       +EQI+ GTPG L+V AQ+T + E 
                     PTK                       IEQIKKGTPGLLKVTAQATENSE 
ULFR01000001.1:55514 caaGTAAGGC  Intron 6   CAGagcaaagacgccagagcgagatg 
                     cca<0-----[55523:57245]-0>taataagccgttatccaccaaca 
                     cag                       tagtgaattaaaatatgtagcta 


SPP00000034_1.0  279 IIEGEYNT                       VMLAIGRDACTRKIGLET 
                      IEGEYNT                       VMLAIGRDACT+KIGL+  
                     TIEGEYNT                       VMLAIGRDACTKKIGLQK 
ULFR01000001.1:57315 aagggtaaGTAAGTA  Intron 7   CAGgacgagaggtaaaagcca 
                     ctagaaac<0-----[57339:58375]-0>tttctggacgcaatgtaa 
                     ataaacca                       ggaaaaatccaaatcaga 


SPP00000034_1.0  305 VGVKINE                          TGKIPVTDEEQTNVPY 
                     VGV+INE                          TGKIPV D+EQTNVPY 
                     VGVRINE           K:N[aat]       TGKIPVNDKEQTNVPY 
ULFR01000001.1:58430 gggaaagAAGTAAGGC  Intron 8   TAGTagaacgagagcaagct 
                     tgtgtaa  <2-----[58453:59120]-2> cgatctaaaaacatca 
                     taggcta                          aaactttcgaaacgtc 


SPP00000034_1.0  329 IYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK              
                     IYAIGD+LE K ELTPVAIQAGRLL +RLY G+  K              
                     IYAIGDVLEGKPELTPVAIQAGRLLVRRLYDGAFTK              
ULFR01000001.1:59170 atgagggcggacgcacggacggattgaactgggtaa              
                     tactgattagacatcctctacggtttggtaagctca              
                     ctttattggcaaacccgatggaggggggtttaacag              


SPP00000034_1.0  365                        CDYENVPTTVFTPLEYGACGLSEEKA 
                                            CDY NVPTTVFTPLEYGACG SEEKA 
                                            CDYINVPTTVFTPLEYGACGYSEEKA 
ULFR01000001.1:59278 GTAAATC  Intron 9   CAGtgtaagcaagtactgtggtgttggag 
                     <0-----[59278:59659]-0>gaatatcccttcctaagcggacaaac 
                                            tttaccctaacatgatactttaaaaa 


SPP00000034_1.0  391 VEKFGEENIE                       VYHSYFWPLEWTIPSR 
                     +E+FG   IE                       VYHSYFWPLEWT+PSR 
                     IERFGNNRIE                       VYHSYFWPLEWTVPSR 
ULFR01000001.1:59738 agatgaaaagGTATTTT  Intron 10  CAGgtcatttccgtagctc 
                     tagtgaagta<0-----[59768:61257]-0>taagatgctagctccg 
                     taatcttgtg                       tcctccgagggacacg 


SPP00000034_1.0  417 DNNKCYAKIICNTKDN                       ERVVGFHVLG 
                     DNN+CYAKIICN  D                         RV+GFHVLG 
                     DNNRCYAKIICNLADR                       NRVIGFHVLG 
ULFR01000001.1:61306 gaaattgaaatacggaGTATGCC  Intron 11  TAGacgagtcgcg 
                     aaaggacattgatcag<0-----[61354:63192]-0>agttgtattg 
                     cccactaattcttatg                       tatttctgtt 


SPP00000034_1.0  443 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE               
                     PNAGE+TQGFAAA+KCG+ K QLDSTIGIHPVCAE               
                     PNAGEITQGFAAAIKCGIRKDQLDSTIGIHPVCAE               
ULFR01000001.1:63223 cagggaacgtgggaatgaaagctgaaagaccgtgg               
                     cacgatcagtccctaggtgaaatagctgtactgca               
                     cttaatcgataaccataagacagccaaactactgg               


SPP00000034_1.0  478                        VFTTLSVTKRSGASILQAGC       
                                            +FTTLSVTKRSG ++ Q+GC       
                                            IFTTLSVTKRSGENVAQSGC       
ULFR01000001.1:63328 GTGGGTA  Intron 12  TAGataattgaactggaggctgt       
                     <0-----[63328:67357]-0>ttcctctcagcgaatcacgg       
                                            actagggagcttatttgtac       


//
Making a G in phase 1 intron
Making a P in phase 1 intron
Making a S in phase 2 intron
Making a N in phase 2 intron
>ULFR01000001.1:subseq(15956652,113357).pep
SYDYDLIVIGGGSGGLAASKEAATFGKNVLVLDFVVPTPLGTTWGLGGTCVNVGCIPKKL
MHQTALLGQAIKDAPAFGWQLGDKPIKHSWSSLTEAVQNHIGSLNWGYRVALREKKVTYE
NAYGEFIGPHTIKTTNNKGVEKIYTAERFLIATGERPRYLNIPGDKEYCITSDDLFSLPY
CPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGVKFI
RKYVPTKIEQIKKGTPGLLKVTAQATENSETIEGEYNTVMLAIGRDACTKKIGLQKVGVR
INENTGKIPVNDKEQTNVPYIYAIGDVLEGKPELTPVAIQAGRLLVRRLYDGAFTKCDYI
NVPTTVFTPLEYGACGYSEEKAIERFGNNRIEVYHSYFWPLEWTVPSRDNNRCYAKIICN
LADRNRVIGFHVLGPNAGEITQGFAAAIKCGIRKDQLDSTIGIHPVCAEIFTTLSVTKRS
GENVAQSGC
//
>ULFR01000001.1:subseq(15956652,113357).[43799:67417].sp
TCATATGACTATGATCTGATTGTCATTGGAGGAGGTTCTGGTGGACTGGCAGCTTCAAAG
GAAGCAGCCACATTTGGCAAGAATGTATTGGTTCTGGATTTTGTCGTCCCTACTCCTTTA
GGAACAACATGGGGTCTTGGAGGAACTTGTGTAAATGTAGGCTGCATCCCTAAAAAGCTG
ATGCACCAGACAGCTTTGCTTGGGCAAGCCATCAAAGATGCACCTGCATTTGGGTGGCAG
CTGGGTGACAAACCCATAAAGCACAGCTGGAGCTCTTTGACAGAAGCTGTTCAGAATCAC
ATTGGCTCTCTGAATTGGGGATACAGAGTGGCCCTCCGAGAGAAAAAGGTCACATATGAA
AATGCTTACGGAGAGTTCATTGGACCACACACAATTAAGACAACAAATAATAAAGGAGTA
GAGAAAATTTACACAGCAGAAAGATTTCTGATTGCCACTGGAGAAAGACCTCGCTATCTC
AACATTCCAGGAGACAAAGAATATTGCATCACCAGTGATGACCTGTTCTCACTGCCTTAC
TGCCCAGGAAAAACATTGGTGGTTGGAGCTTCTTACGTTGCTCTTGAATGTGCTGGATTT
CTTGCTGGGCTTGGTTTAGATGTGACTGTCATGGTGCGCTCCATTCTCCTGAGGGGCTTT
GATCAGGATATGGCAAATAAAATAGGAGAACATATGGAAGAGCATGGTGTTAAGTTCATA
AGAAAATATGTGCCCACAAAGATTGAACAGATTAAGAAAGGAACTCCTGGACTACTAAAA
GTTACAGCTCAGGCTACAGAGAACTCTGAAACAATTGAAGGAGAATACAACACAGTGATG
CTAGCAATAGGAAGAGATGCCTGCACAAAAAAAATTGGCCTACAGAAAGTTGGAGTGAGG
ATCAATGAAAATACAGGAAAAATCCCTGTTAATGACAAGGAACAAACAAACGTGCCTTAC
ATCTATGCTATTGGAGATGTTCTGGAGGGCAAACCAGAACTCACCCCCGTGGCAATTCAG
GCGGGAAGGTTGTTGGTGAGGAGGCTTTATGATGGAGCATTCACAAAGTGTGATTATATA
AACGTCCCCACTACAGTATTCACACCTTTGGAATATGGAGCCTGTGGTTATTCAGAAGAA
AAAGCAATTGAAAGATTTGGCAATAATAGGATTGAGGTTTACCACAGTTACTTCTGGCCA
CTGGAGTGGACAGTCCCATCCCGGGACAACAACAGATGCTATGCAAAAATTATTTGCAAT
CTTGCAGATAGGAATCGAGTTATTGGTTTCCATGTGCTTGGTCCCAATGCTGGAGAAATT
ACCCAGGGATTTGCAGCAGCCATCAAATGTGGAATAAGGAAAGACCAATTGGACAGCACA
ATAGGAATCCATCCAGTCTGTGCGGAGATATTCACTACATTGTCGGTGACAAAGCGCTCT
GGTGAAAATGTTGCTCAGTCTGGATGC
//
ULFR01000001.1:subseq(15956652,113357)	GeneWise	match	43799	67417	785.99	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	43799	43858	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	43859	49220	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	49221	49293	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	49294	50000	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	50001	50120	0.00	+	2	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	50121	50694	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	50695	50840	0.00	+	2	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	50841	52990	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	52991	53106	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	53107	55296	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	55297	55522	0.00	+	1	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	55523	57245	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	57246	57338	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	57339	58375	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	58376	58452	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	58453	59120	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	59121	59277	0.00	+	1	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	59278	59659	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	59660	59767	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	59768	61257	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	61258	61353	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	61354	63192	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	63193	63327	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	intron	63328	67357	0.00	+	.	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
ULFR01000001.1:subseq(15956652,113357)	GeneWise	cds	67358	67417	0.00	+	0	ULFR01000001.1:subseq(15956652,113357)-genewise-prediction-1
//
