
genewise output
Score 274.05 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000026_1.0    7 PSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLK 
                     P  +++ MW++G GA+GAA   ++LANTD+FLSK + A+ E+LE+IDLK 
                     PIDLSVAMWTLGLGAIGAAVTGMILANTDLFLSKAEMASTEFLEEIDLK 
ULFR01001072.1: 1138 cagctggatacgcggaggggagaacgaagttctaggagtagtcggagca 
                     ctatctctgctgtgctgcctcgtttcacatttcacatcccattaatata 
                     gtcccaagggcaaaccgttggggcgctgtgcccaaagccggcaaaatgg 


SPP00000026_1.0   56 TLEK                          EPRTFKAKELWEKNGAVIM 
                     TL +                          E RTFKAK+LW+  GAVIM 
                     TLGQ          -:G[gga]        EQRTFKAKDLWKTKGAVIM 
ULFR01001072.1: 1285 acgcGGTAAGAC  Intron 1   AAGGAgcaatagagctaaagggaa 
                     ctga <1-----[1298 : 3755]-1>  aagctacaatgacagcttt 
                     tgca                          agaccacgtgggggttgcg 


SPP00000026_1.0   79 AVRRPGCFLCRE                       EAADLSSLKSMLDQ 
                     AVRRPG FLCRE                       EAA+LSSLK +LDQ 
                     AVRRPGXFLCRE                       EAAELSSLKPQLDQ 
ULFR01001072.1: 3815 ggaacgttttagGTAATGT  Intron 2   TAGggggcttcacccgc 
                     ctggcggttgga<0-----[3851 : 9038]-0>accatcctacataa 
                     ggggtaatgcag                       gctggctggcaccg 


SPP00000026_1.0  105 LGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK                 
                     +GVPLYAVVKE+I TEV DFQPYFKGEIFLDEK                 
                     VGVPLYAVVKENIGTEVADFQPYFKGEIFLDEK                 
ULFR01001072.1: 9081 gggcctgggagaagaggggtccttaggatcgga                 
                     tgtctacttaaatgcatcatacatagatttaaa                 
                     agcttttggagctggggcccggccgagatgtag                 


SPP00000026_1.0  138                        KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            +KFYGPQRR M+++ ++R  VW NF+ 
                                            RKFYGPQRRTMLLLALFRWNVWRNFW 
ULFR01001072.1: 9180 GTAGGTC  Intron 3   CAGaattgccaaaacccgctctagtaatt 
                     <0-----[9180 :11348]-0>gatagcaggcttttcttggatggatg 
                                            aactctagaaggcgttccgccggccg 


SPP00000026_1.0  164 RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RAW  G++GN++GEG ILGGVFV+G GKQ                     
                     RAWRSGYTGNIDGEGVILGGVFVIGPGKQ                     
ULFR01001072.1:11427 cgtaagtagaagggggacgggtgagcgacGTAGAAG  Intron 4    
                     gcggggacgatagagtttggttttgcgaa<0-----[11514:12851] 
                     ccggccccccctaacgcgtgttgcccgag                     


SPP00000026_1.0  193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQ                 
                        G+LLEHREKEFGDKV+L +VL+A + IK Q                 
                        GVLLEHREKEFGDKVSLEAVLDAIRKIKVQ                 
ULFR01001072.1:12849 CAGggctgccgagtggagacgggcggaaaaagc                 
                     -0>gtttaagaaatgaatgtacttactgatata                 
                        gtcgactgaatacacccatctcccggcaga                 


//
Making a G in phase 1 intron
>ULFR01001072.1:subseq(0,24473).pep
PIDLSVAMWTLGLGAIGAAVTGMILANTDLFLSKAEMASTEFLEEIDLKTLGQGEQRTFK
AKDLWKTKGAVIMAVRRPGXFLCREEAAELSSLKPQLDQVGVPLYAVVKENIGTEVADFQ
PYFKGEIFLDEKRKFYGPQRRTMLLLALFRWNVWRNFWRAWRSGYTGNIDGEGVILGGVF
VIGPGKQGVLLEHREKEFGDKVSLEAVLDAIRKIKVQ
//
>ULFR01001072.1:subseq(0,24473).[1138:12941].sp
CCGATTGACCTCTCCGTAGCAATGTGGACGCTCGGACTAGGAGCCATCGGGGCTGCTGTG
ACGGGGATGATCCTGGCCAATACGGATTTGTTCCTCTCCAAAGCAGAAATGGCCTCCACG
GAGTTCCTAGAAGAAATAGATCTGAAGACTCTGGGCCAAGGAGAACAGAGAACCTTCAAA
GCCAAGGATCTGTGGAAGACGAAGGGTGCTGTGATCATGGCGGTGAGGAGGCCTGGATGA
TTTTTGTGCAGAGAGGAGGCCGCTGAGCTGTCCTCTCTGAAGCCCCAACTCGACCAGGTA
GGGGTCCCTCTTTATGCTGTGGTGAAAGAGAACATTGGGACGGAGGTGGCCGACTTCCAG
CCGTACTTCAAGGGAGAGATATTTCTGGATGAAAAGAGAAAATTCTATGGCCCTCAAAGG
AGAACAATGCTGCTCCTGGCTCTTTTCCGCTGGAACGTCTGGAGGAACTTCTGGCGCGCC
TGGAGGAGCGGCTACACCGGCAACATCGATGGAGAAGGCGTGATCCTGGGTGGGGTTTTT
GTGATCGGCCCCGGGAAACAGGGGGTTCTCTTGGAACACCGTGAGAAAGAATTTGGAGAC
AAAGTCAGCCTCGAAGCTGTCCTTGACGCCATCAGGAAGATCAAAGTGCAA
//
ULFR01001072.1:subseq(0,24473)	GeneWise	match	1138	12941	274.05	+	.	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	cds	1138	1297	0.00	+	0	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	intron	1298	3755	0.00	+	.	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	cds	3756	3850	0.00	+	2	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	intron	3851	9038	0.00	+	.	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	cds	9039	9179	0.00	+	0	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	intron	9180	11348	0.00	+	.	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	cds	11349	11513	0.00	+	0	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	intron	11514	12851	0.00	+	.	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
ULFR01001072.1:subseq(0,24473)	GeneWise	cds	12852	12941	0.00	+	0	ULFR01001072.1:subseq(0,24473)-genewise-prediction-1
//
