
genewise output
Score 235.47 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000023_1.0   32 SGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE             
                     +GS R+KKN KV FS +ELRKRLTPLQYHVTQEKGTE             
                     AGSRREKKNYKVTFSDEELRKRLTPLQYHVTQEKGTE             
ULFR01000001.1-70121 ggtcagaaatagattgggcaaccaccctcgacgagag             
                     cgcggaaaaaatctcaaatgagtcctaaatcaaagca             
                     agatgaagctggttttaagagggatggctttggaata             


SPP00000023_1.0   69                           AFEGEYTHHKDPGIYKCVVCGTP 
                                               AFEGEYT+HK  GIYKCVVCG+P 
                                S:S[agt]       AFEGEYTYHKAHGIYKCVVCGSP 
ULFR01000001.1-70010 AGGTATAGC  Intron 1   TAGTgtgggtatcagcgatatggtgac 
                       <2-----[70008:66281]-2> ctagaacaaacagtaagttgggc 
                                               ctaaatactactgacattttatt 


SPP00000023_1.0   93 LF                          SETKFDSGS             
                     LF                          SETKFDS S             
                     LF           K:K[aaa]       SETKFDSNS             
ULFR01000001.1-66210 ttAAGTAAGTA  Intron 2   TAGAtgaatgtat             
                     tt  <2-----[66202:63620]-2> cacatacac             
                     ac                          taggtccta             


SPP00000023_1.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSF+D+INS+ IT TDD+S+GM 
                               G:G[gga]        WPSFYDLINSDTITCTDDYSFGM 
ULFR01000001.1-63591 GGTATGTT  Intron 3   CAGGAtctttgcaatgaaataggtttga 
                      <1-----[63590:53065]-1>  gcctaattacactcgcaaactgt 
                                               gtacttacctcatatttccatgg 


SPP00000023_1.0  129 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSC+Q                       CGAHLGHIFDDGPRPTG 
                     HRVETSCTQ                       CGAHLGHIFDDGPRPTG 
ULFR01000001.1-52993 caggaatacGTCAGTT  Intron 4   CAGtggccgcatgggcccag 
                     agtacggca<0-----[52966:50162]-0>ggcatgattaagcgccg 
                     cgtgacctg                       tttttctatctgatata 


SPP00000023_1.0  155 KRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL            
                     KRYCINSA+L+F PAD +   E  +G  S  Q +K EL            
                     KRYCINSASLAFEPADKNHAGEKNAGSTS-SQPNKTEL            
ULFR01000001.1-50110 acttaatgttgtgcggaacgggaaggtat tccaaagc            
                     agagtaccctctaccaaaacgaaacgccc cacaacat            
                     aaccatataattgtacgtttaaattttat aaatgaag            


//
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>ULFR01000001.1:subseq(38258346,120109).pep
AGSRREKKNYKVTFSDEELRKRLTPLQYHVTQEKGTESAFEGEYTYHKAHGIYKCVVCGS
PLFKSETKFDSNSGWPSFYDLINSDTITCTDDYSFGMHRVETSCTQCGAHLGHIFDDGPR
PTGKRYCINSASLAFEPADKNHAGEKNAGSTSSQPNKTEL
//
>ULFR01000001.1:subseq(38258346,120109).[70121:49998].sp
GCAGGGTCACGTAGGGAAAAAAAGAACTATAAGGTGACTTTTTCTGATGAAGAACTGAGA
AAGCGGCTGACACCTCTGCAGTACCATGTTACTCAGGAGAAAGGAACTGAAAGTGCCTTT
GAAGGAGAATATACATACCATAAAGCCCATGGGATATACAAATGTGTTGTTTGTGGAAGT
CCTTTATTCAAATCTGAAACGAAGTTTGACTCCAATTCAGGATGGCCTTCATTCTATGAT
CTAATCAACTCTGACACAATTACATGTACTGATGACTACTCATTTGGGATGCACAGGGTT
GAGACAAGCTGCACTCAGTGTGGTGCTCATCTTGGCCATATATTTGACGATGGGCCACGT
CCAACTGGAAAACGATACTGCATAAATTCAGCTTCATTAGCTTTTGAGCCTGCAGACAAG
AATCATGCTGGAGAAAAAAATGCTGGTTCTACATCTTCACAACCAAATAAGACAGAACTG
//
ULFR01000001.1:subseq(38258346,120109)	GeneWise	match	70121	50000	235.47	-	.	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	cds	70121	70009	0.00	-	0	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	intron	70008	66281	0.00	-	.	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	cds	66280	66203	0.00	-	1	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	intron	66202	63620	0.00	-	.	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	cds	63619	63591	0.00	-	1	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	intron	63590	53065	0.00	-	.	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	cds	53064	52967	0.00	-	2	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	intron	52966	50162	0.00	-	.	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
ULFR01000001.1:subseq(38258346,120109)	GeneWise	cds	50161	50000	0.00	-	0	ULFR01000001.1:subseq(38258346,120109)-genewise-prediction-1
//
