
genewise output
Score 722.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000018_1.0   62 ELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSC-----SV 
                     E ALK+LG +GLFLFSSLDT+ D++ISPEEFKPIAEKLTG C        
                     ETALKSLGNEGLFLFSSLDTNNDLFISPEEFKPIAEKLTGKCFKNLRAE 
ULFR01000020.1-64855 gagcatcgaggctctttcgaaagttaacggtacaggacagattaatagg 
                     acctactgaagttttcctacaaatttgcaatactcaatcgagtaatgca 
                     aacgatgatgatccctcgttcttgccctgacaatagagttgttgtgaaa 


SPP00000018_1.0  106 TQTGVQWCSHSSLQPQLPWLNXSSCLSLLR---S                
                       +  + C+ + L     WL   +C SL+    S                
                     MMSKYRCCTKTFLPFFSSWLKCVACTSLVMMWLS                
ULFR01000020.1-64708 aaaatcttaaatcctttttcatggtattgaatca                
                     ttgaagggcacttcttccgtagtcgccttttgtg                
                     ggtatgccaaacaattcagtatgttttatgggac                


SPP00000018_1.0  137                           -TPAASCEEEELPPDPSEETLTI 
                                                 P +  EEEE+  DP+ ETL+I 
                               -:S[agc]        IVPVSGTEEEEV-MDPNGETLSI 
ULFR01000020.1-64606 AGTGTGTG  Intron 1   CAGGCagcgtgaggggg agcaggacta 
                      <1-----[64605:60438]-1>  ttctcgcaaaat tacagactct 
                                               attgtcgggagg gtgtggactc 


SPP00000018_1.0  159 EARFQPLLPETMTKSKDGFLG                       VSRLA 
                      A+FQPLL ETMTKSKDGFLG                       +S +A 
                     LAKFQPLLMETMTKSKDGFLG                       ISHVA 
ULFR01000020.1-60369 cgatccctagaaaaaaggtcgGTGAGTA  Intron 2   TAGatcgg 
                     tcatactttactcagaagttg<0-----[60306:59202]-0>tcatc 
                     taacgagggacgagcatcctc                       tctgc 


SPP00000018_1.0  185 LSGLRNWTAAASPSAVFATRHFQPFLPPPGQ-ELGEPWWIIPSELSMFT 
                      +GLRNWTA ASP +V+  R F+ FLPP  + ELG+PWWIIPSEL++FT 
                     FTGLRNWTAPASPLSVMFARQFKAFLPPKNKLELGDPWWIIPSELNIFT 
ULFR01000020.1-59186 tagccatagcgtccagatgactagtcccaaatgcggcttaacagtaata 
                     tcgtgagcccccctgtttcgatacttccaaatatgacggttcgatattc 
                     ttgcctgatttacctggttaacgcttcagtggatttaggctctaacatc 


SPP00000018_1.0  233 GYLSNNRFYPPPPKGKE                       VIIHRLLSM 
                     GYL NNRF PP PKGKE                       VIIH+LLSM 
                     GYLPNNRFSPPAPKGKE                       VIIHKLLSM 
ULFR01000020.1-59039 gtccaacttccgcagagGTAAGCA  Intron 3   TAGgaacactaa 
                     gatcaagtcccccagaa<0-----[58988:58017]-0>tttaattgt 
                     attctttcctatcgcgg                       cctcgcgtg 


SPP00000018_1.0  259 FHPRPFVKTRFAPQGAVACLTAISDFYYTVMF                  
                     FHPRPFVKTRFAPQGAVAC+ A+++FYY + F                  
                     FHPRPFVKTRFAPQGAVACIQAVAEFYYKIAF                  
ULFR01000020.1-57989 tcccctgaactgccggggtacggggtttaagt                  
                     tacgcttacgtccagctcgtactcataaatct                  
                     ccagatgatttttgaagcctataagcccaacc                  


SPP00000018_1.0  291                           IHAEFQLSEPPDFPFWFSPAQFT 
                                               IHAEFQL+EPPDFPFWFSPAQFT 
                                R:R[aga]       IHAEFQLNEPPDFPFWFSPAQFT 
ULFR01000020.1-57893 AGGTAAAGT  Intron 4   CAGAacggtccagccgtcttttcgcta 
                       <2-----[57891:55662]-2> tacatataaccatctgtcccatc 
                                               ctaacagtgtatcacgtttcacg 


SPP00000018_1.0  315 GHIILSKDATHVRDFRLFVPNH                          S 
                     G+I+ SKD++HVR+F+LFVPN+                          S 
                     GYIVFSKDSSHVREFKLFVPNN           R:R[agg]       S 
ULFR01000020.1-55591 gtagttagttcgcgtactgcaaAGGTAGGTT  Intron 5   CAGGt 
                     gatttcaaccatgatatttcaa  <2-----[55523:54703]-2> c 
                     cctccagttcttagcgatcttc                          t 


SPP00000018_1.0  339 LNVDMEWLYGASESSNMEVDIGYIPQ                        
                     LNVDMEWLYGASESSNMEVDIGY+PQ                        
                     LNVDMEWLYGASESSNMEVDIGYLPQ                        
ULFR01000020.1-54698 caggagtttggtgaaaagggagttccGTCTGTA  Intron 6   CAG 
                     tatatagtagccaggatatatgatca<0-----[54620:54328]-0> 
                     ctatgagattcagcccgggtaacatg                        


SPP00000018_1.0  365 MELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEE 
                     MELE+ GPS PSVI DE+G++IDS    GEP+QF+FE+I WQ+E+SWEE 
                     MELESLGPSTPSVIHDENGNVIDSR--EGEPIQFIFEDISWQKEISWEE 
ULFR01000020.1-54327 agcgtcgctactgacggagagagaa  gggcactatggattcagaatgg 
                     tatactgcccccttaaaagattagg  agactatttaatcgaaatggaa 
                     ggggtgaatctagtttatgcgtcca  aaagtatttactcggaaacgaa 


SPP00000018_1.0  414 AARRLEVAMYPFKK                       VSYLPFTEAFDR 
                     A+ +LEV MYPFKK                       VSY PFT+AF++ 
                     ASGKLEVVMYPFKK                       VSYFPFTQAFEK 
ULFR01000020.1-54186 gtgacgggatctaaGTATGTA  Intron 7   CAGgtttctacgtga 
                     ccgatatttactaa<0-----[54144:53881]-0>tcatctcactaa 
                     atgagagcgtatga                       tcctctcgttag 


SPP00000018_1.0  440 AKAENKLVHSILLWGALDDQSCX                           
                     AK+E KLVHSILLWGALDDQSCX                           
                     AKSEGKLVHSILLWGALDDQSCX          G:G[ggt]         
ULFR01000020.1-53844 gatggacgctacttggtggctttGGTAAGGG  Intron 8   CAGGT 
                     cacagattactttggctaaacgg <1-----[53774:52647]-1>   
                     cgtgtatttcacagacattgaca                           


SPP00000018_1.0  464 SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ             
                     SGRTLRETVLESSPIL  LNESFISTWSLVKELE+LQ             
                     SGRTLRETVLESSPILAFLNESFISTWSLVKELEDLQ             
ULFR01000020.1-52644 tgcaccgagcgatcacgtcagataaatttgagcggtc             
                     cggctgacttagccttcttaagttgcgcttaataata             
                     ggatcgaatgatgcctacgcgtcctcgggggggatag             


SPP00000018_1.0  501                        NNQENSSHQKLAGLHLEKYSFPVEMM 
                                            + Q+  +  KLA LHLEKY+FPVE+M 
                                            DKQDEIT-SKLADLHLEKYNFPVEIM 
ULFR01000020.1-52533 GTAAGCT  Intron 9   CAGgacggaa aacggcccgatatcggaa 
                     <0-----[52533:51298]-0>aaaaatc gatcatataaaatctatt 
                                            tagcgcc cagacattaatcctggtg 


SPP00000018_1.0  527 ICLPNGTV                       VHHINANYFLDITSVKPE 
                     ICLPNGTV                       VHHINANYFLDITS+KPE 
                     ICLPNGTV                       VHHINANYFLDITSMKPE 
ULFR01000020.1-51222 atccagagGTAAGAT  Intron 10  CAGgccaagattcgaataacg 
                     tgtcagct<0-----[51198:50168]-0>taatacaattatcctaca 
                     ccgctccg                       tccctctttgttttggta 


SPP00000018_1.0  553 EIESNLFSFSSTFEDPSTATYMQFLKEGLRR                   
                     E+ES++FSFSS+FEDPSTATY+QFLKEGL++                   
                     EVESSIFSFSSSFEDPSTATYLQFLKEGLQK                   
ULFR01000020.1-50113 gggaaatatttatggctagatccttaggcca                   
                     ataggttgtccgtaacccccatattaagtaa                   
                     atgcccttcccttaccaaattcgcggaatga                   


//
Making a S in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>ULFR01000020.1:subseq(7251308,114843).pep
ETALKSLGNEGLFLFSSLDTNNDLFISPEEFKPIAEKLTGKCFKNLRAEMMSKYRCCTKT
FLPFFSSWLKCVACTSLVMMWLSSIVPVSGTEEEEVMDPNGETLSILAKFQPLLMETMTK
SKDGFLGISHVAFTGLRNWTAPASPLSVMFARQFKAFLPPKNKLELGDPWWIIPSELNIF
TGYLPNNRFSPPAPKGKEVIIHKLLSMFHPRPFVKTRFAPQGAVACIQAVAEFYYKIAFR
IHAEFQLNEPPDFPFWFSPAQFTGYIVFSKDSSHVREFKLFVPNNRSLNVDMEWLYGASE
SSNMEVDIGYLPQMELESLGPSTPSVIHDENGNVIDSREGEPIQFIFEDISWQKEISWEE
ASGKLEVVMYPFKKVSYFPFTQAFEKAKSEGKLVHSILLWGALDDQSCXGSGRTLRETVL
ESSPILAFLNESFISTWSLVKELEDLQDKQDEITSKLADLHLEKYNFPVEIMICLPNGTV
VHHINANYFLDITSMKPEEVESSIFSFSSSFEDPSTATYLQFLKEGLQK
//
>ULFR01000020.1:subseq(7251308,114843).[64855:50019].sp
GAAACAGCCCTGAAATCTCTGGGAAATGAGGGACTTTTCCTCTTCTCTTCCCTGGATACT
AACAATGATTTGTTCATCAGCCCTGAGGAATTCAAACCAATTGCAGAGAAACTGACTGGT
AAGTGTTTTAAGAATTTGAGAGCAGAAATGATGAGTAAATATCGGTGCTGCACAAAAACA
TTCCTACCATTTTTTTCCTCATGGCTTAAATGTGTGGCTTGTACTTCTTTAGTTATGATG
TGGCTAAGCAGCATAGTTCCTGTGTCTGGCACGGAGGAGGAAGAGGTGATGGATCCGAAT
GGGGAGACACTCTCTATCCTTGCAAAATTCCAGCCACTGTTGATGGAAACCATGACAAAG
AGCAAAGATGGCTTCCTTGGCATTTCCCATGTGGCCTTTACTGGGCTCCGCAATTGGACA
GCTCCTGCTTCACCCCTCAGTGTGATGTTTGCTAGACAATTCAAGGCCTTTCTTCCCCCA
AAGAATAAGTTGGAACTTGGTGATCCATGGTGGATCATTCCCAGTGAATTAAACATATTT
ACCGGATATCTTCCCAATAATCGTTTCTCCCCTCCAGCTCCCAAGGGCAAGGAGGTCATC
ATTCACAAGCTCTTGAGTATGTTCCACCCACGGCCATTTGTGAAAACTCGTTTTGCTCCT
CAGGGAGCAGTGGCCTGCATTCAAGCTGTAGCAGAGTTCTACTACAAAATAGCCTTCAGA
ATCCATGCAGAATTCCAACTGAATGAGCCTCCAGATTTCCCATTCTGGTTTTCTCCTGCC
CAATTCACGGGCTACATTGTCTTCTCAAAGGATTCTTCCCATGTTCGAGAGTTCAAGCTA
TTTGTCCCTAATAACAGGTCTCTCAATGTAGATATGGAATGGTTATATGGTGCCTCAGAG
AGCAGCAACATGGAGGTGGATATAGGATACTTACCTCAGATGGAGCTGGAGTCTCTGGGA
CCATCTACCCCTTCAGTGATTCATGATGAAAATGGGAACGTGATTGACAGCAGAGAAGGA
GAACCGATTCAATTTATTTTTGAAGACATTTCCTGGCAGAAAGAAATAAGCTGGGAAGAA
GCATCTGGGAAACTGGAAGTGGTCATGTATCCATTTAAGAAAGTTTCCTACTTTCCCTTT
ACCCAGGCTTTTGAAAAGGCCAAGTCTGAGGGTAAACTTGTTCATTCCATACTCTTATGG
GGAGCCTTAGATGATCAGTCATGCTGAGGTTCGGGGCGAACTCTCCGGGAAACAGTTCTG
GAAAGTTCGCCCATCCTTGCATTCCTGAACGAGAGTTTCATCAGTACCTGGTCGTTGGTG
AAGGAGCTGGAAGATTTACAGGATAAACAGGACGAGATCACCAGCAAACTGGCAGACCTA
CATCTTGAAAAATATAACTTCCCTGTGGAGATTATGATCTGCCTGCCCAATGGCACCGTG
GTTCACCACATCAATGCCAATTATTTTCTGGATATTACTTCTATGAAGCCTGAAGAAGTT
GAGAGCAGCATCTTTAGTTTCTCCTCCAGTTTTGAAGACCCCTCAACAGCAACTTATCTC
CAGTTCTTGAAGGAAGGACTTCAGAAA
//
ULFR01000020.1:subseq(7251308,114843)	GeneWise	match	64855	50021	729.71	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	64855	64606	0.00	-	0	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	64605	60438	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	60437	60307	0.00	-	2	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	60306	59202	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	59201	58989	0.00	-	0	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	58988	58017	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	58016	57892	0.00	-	0	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	57891	55662	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	55661	55524	0.00	-	1	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	55523	54703	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	54702	54621	0.00	-	1	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	54620	54328	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	54327	54145	0.00	-	0	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	54144	53881	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	53880	53775	0.00	-	0	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	53774	52647	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	52646	52534	0.00	-	2	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	52533	51298	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	51297	51199	0.00	-	0	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	intron	51198	50168	0.00	-	.	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
ULFR01000020.1:subseq(7251308,114843)	GeneWise	cds	50167	50021	0.00	-	0	ULFR01000020.1:subseq(7251308,114843)-genewise-prediction-1
//
