
genewise output
Score 112.66 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000016_1.0    1 MVYISN                          QVLDSRSQSPWRLSLIT 
                     MVYISN                          QVLD+RS++PW LS IT 
                     MVYISN          G:G[gga]        QVLDNRSRAPWSLSSIT 
ULFR01000004.1:49438 agtataGGTGAGAA  Intron 1   TAGGAcgtgacacgctatttaa 
                     ttatca <1-----[49457:50000]-1>  attaagggccggtcctc 
                     gtctgt                          atgtcgtgtagtgatat 


SPP00000016_1.0   25 DFFWGIAEFVVL                          FKTLLQQDVKK 
                     DFFWGIA+F+V+                          F++++  D+   
                     DFFWGIADFIVM           F:F[ttt]       FQSIVHPDL-- 
ULFR01000004.1:50054 gtttgaggtagaTTGTAAGTG  Intron 2   TAGTtcaagccgt   
                     attggtcatttt  <2-----[50092:51371]-2> tagttacat   
                     cccgaaatcaag                          tgcttcatg   


SPP00000016_1.0   49 RRSYGNSSDSRYDDGR                          PPGNPPR 
                     RR Y +SS SRYDDGR                          PPG P R 
                     RRGYASSSSSRYDDGR           G:G[gga]       PPGFPRR 
ULFR01000004.1:51400 aagtgtttttatgggaGGGTACTGC  Intron 3   CAGAccgtccc 
                     gggaccccccgaaagg  <2-----[51450:52432]-2> ccgtcgg 
                     gaccattttaatctaa                          taatttt 


SPP00000016_1.0   73 RMGRINHLRGPSPPPMAGG                               
                     RMGRI H  GPSPPPMAGG                               
                     RMGRITHFGGPSPPPMAGG                               
ULFR01000004.1:52455 aagcaactggcacccaggg                               
                     gtggtcatggcgccctcgg                               
                     agtaacctatatcaagttt                               


//
Making a G in phase 1 intron
Making a F in phase 2 intron
Making a G in phase 2 intron
>ULFR01000004.1:subseq(28132195,100143).pep
MVYISNGQVLDNRSRAPWSLSSITDFFWGIADFIVMFFQSIVHPDLRRGYASSSSSRYDD
GRGPPGFPRRRMGRITHFGGPSPPPMAGG
//
>ULFR01000004.1:subseq(28132195,100143).[49438:52511].sp
ATGGTTTACATTTCGAATGGACAAGTTTTGGATAACCGGAGTCGGGCTCCATGGAGTTTG
TCATCTATAACTGACTTCTTCTGGGGAATAGCAGATTTCATAGTAATGTTTTTTCAGAGC
ATTGTTCACCCAGATTTGAGGAGAGGCTACGCATCTTCTTCTTCTTCAAGATATGACGAT
GGAAGAGGACCTCCAGGATTTCCTCGTCGTAGAATGGGTCGAATAACCCACTTTGGAGGT
CCAAGTCCCCCACCAATGGCTGGTGGT
//
ULFR01000004.1:subseq(28132195,100143)	GeneWise	match	49438	52511	113.66	+	.	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
ULFR01000004.1:subseq(28132195,100143)	GeneWise	cds	49438	49456	0.00	+	0	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
ULFR01000004.1:subseq(28132195,100143)	GeneWise	intron	49457	50000	0.00	+	.	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
ULFR01000004.1:subseq(28132195,100143)	GeneWise	cds	50001	50091	0.00	+	2	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
ULFR01000004.1:subseq(28132195,100143)	GeneWise	intron	50092	51371	0.00	+	.	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
ULFR01000004.1:subseq(28132195,100143)	GeneWise	cds	51372	51449	0.00	+	1	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
ULFR01000004.1:subseq(28132195,100143)	GeneWise	intron	51450	52432	0.00	+	.	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
ULFR01000004.1:subseq(28132195,100143)	GeneWise	cds	52433	52511	0.00	+	1	ULFR01000004.1:subseq(28132195,100143)-genewise-prediction-1
//
