
genewise output
Score 97.01 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000014_1.0   45 RVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGS     
                     RV+GR A A+SQ L L  P++ V+VN  KPRR SFEV LL+ DG+     
                     RVFGRTAEAISQELCLAFPDICVEVNLEKPRRNSFEVVLLKKDGT     
ULFR01000127.1:50000 cgtgcagggaacgctcgtcgatgggacgaccaaatgggctaagga     
                     gttggccactgaatgtctcatgtatataacggagtattttaaagc     
                     actacatgtccaggcgcttcctggcctaacgatctagtcgagtcc     


SPP00000014_1.0   90                           AELWTGIKKGPPRKLKFPEPQEV 
                                                ELW+G+KKGPPRKLKFPEP  + 
                               S:K[aaa]        IELWSGLKKGPPRKLKFPEPSHI 
ULFR01000127.1:50135 AGTGAGTT  Intron 1   TAGAAagctagcaagcccatatcgcaca 
                      <1-----[50136:54483]-1>  tatgggtaagccgatatcacgat 
                                               agagtttaagaccagacaacccc 


SPP00000014_1.0  114 VEELK                                             
                     VE +K                                             
                     VEMVK                                             
ULFR01000127.1:54555 ggaga                                             
                     tatta                                             
                     taggg                                             


//
Making a K in phase 1 intron
>ULFR01000127.1:subseq(1304786,104569).pep
RVFGRTAEAISQELCLAFPDICVEVNLEKPRRNSFEVVLLKKDGTKIELWSGLKKGPPRK
LKFPEPSHIVEMVK
//
>ULFR01000127.1:subseq(1304786,104569).[50000:54569].sp
CGAGTCTTTGGACGCACAGCTGAGGCTATCAGCCAAGAGCTGTGCCTGGCCTTTCCTGAC
ATCTGTGTGGAGGTCAACCTTGAAAAACCCCGGAGAAATAGCTTTGAAGTGGTTCTCTTG
AAAAAGGATGGCACCAAAATAGAGCTATGGAGTGGTCTTAAAAAAGGGCCACCCCGCAAA
TTGAAATTCCCAGAACCCAGCCACATCGTTGAAATGGTGAAG
//
ULFR01000127.1:subseq(1304786,104569)	GeneWise	match	50000	54569	97.01	+	.	ULFR01000127.1:subseq(1304786,104569)-genewise-prediction-1
ULFR01000127.1:subseq(1304786,104569)	GeneWise	cds	50000	50135	0.00	+	0	ULFR01000127.1:subseq(1304786,104569)-genewise-prediction-1
ULFR01000127.1:subseq(1304786,104569)	GeneWise	intron	50136	54483	0.00	+	.	ULFR01000127.1:subseq(1304786,104569)-genewise-prediction-1
ULFR01000127.1:subseq(1304786,104569)	GeneWise	cds	54484	54569	0.00	+	2	ULFR01000127.1:subseq(1304786,104569)-genewise-prediction-1
//
