
genewise output
Score 556.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000033_1.0   38 FEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLG 
                     F P++  L  S+RLT F+ +KG+GCKVPQ+ L KLL  L           
                     FNPESYELDKSFRLTRFTELKGTGCKVPQDILQKLLESL---------- 
ULFR01000059.1-59278 tacgatgcgaatctactagcagagtagccgatcatcgtt           
                     tacagaataagtgtcgtcatagcggatcaattaattact           
                     ttaatcatcattgactcgataccctagtgctggagcata           


SPP00000033_1.0   87 RGLVGGQEEASQEAGLPAGAGPSPTFPAL                     
                           QE   QE     GA     +P L                     
                     ------QENHFQEDEQFLGA----VMPRL                     
ULFR01000059.1-59161       cgactcgggcttgg    gacat                     
                           aaaataaaaattgc    ttcgt                     
                           aattcaatagtggt    tgaag                     


SPP00000033_1.0  116                           IGMDSCVIPLRHGGLSLVQTTDF 
                                               IGMD+CVIPLRHGGLSLVQTTD+ 
                               G:G[gga]        IGMDTCVIPLRHGGLSLVQTTDY 
ULFR01000059.1-59104 GGTAAGAA  Intron 1   CAGGAagagatgactacggcttgcaagt 
                      <1-----[59103:58635]-1>  tgtacgttctgaggtcttaccaa 
                                               tcgttctttgacatgtgcgaacc 


SPP00000033_1.0  140 FYPLVEDPYMM                       GRIACANVLSDLYAM 
                     +YP+V+DPYMM                       GRIACANVLSDLYAM 
                     IYPIVDDPYMM                       GRIACANVLSDLYAM 
ULFR01000059.1-58563 atcagggctaaGTATGAT  Intron 2   CAGgcagtgagcagctga 
                     tacttaacatt<0-----[58530:57739]-0>ggtcgcattgatact 
                     ttctgccctgg                       accatctctttctcg 


SPP00000033_1.0  166 GITECDNMLMLLSVSQSMSEE                       EREKV 
                     G+TECDNMLMLL +S  M++                        ER+K+ 
                     GVTECDNMLMLLGISNKMTDR                       ERDKI 
ULFR01000059.1-57693 ggagtgaataccgaaaaaagaGTAAGTT  Intron 3   AAGgagaa 
                     gtcagaatttttgtgaatcag<0-----[57630:56347]-0>agaat 
                     accatctgggtgtcttagacg                       aatac 


SPP00000033_1.0  192 TPLMVKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFI    
                      PL+++GF+DAAEE GT+VTGGQTV+NPWI++GGVAT VCQPNEFI    
                     MPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFI    
ULFR01000059.1-56331 accaacgtagggggggatgaggcagtactagtggggaagtccagta    
                     tctttagtaaccaacgcctcggacttacgtttggtccctgacaatt    
                     gtatcaatattaagaaaagtttaaaactgttaaagcatctgttgta    


SPP00000033_1.0  238                           PDSAVVGDVLVLTKPLGTQVAVN 
                                               PD+AV GDVLVLTKPLGTQVAV  
                                M:M[atg]       PDNAVPGDVLVLTKPLGTQVAVA 
ULFR01000059.1-56193 ATGTAAGTT  Intron 4   TAGGcgaggcgggcgtaactgacgggg 
                       <2-----[56191:55298]-2> caactcgattttcactgcatctc 
                                               attacgatgggaggagaaaatat 


SPP00000033_1.0  262 AHQWLDN                       PERWNKVKMVVSREEVELA 
                      HQWLD                        PE+WNK+K+VV++E+VELA 
                     VHQWLDI                       PEKWNKIKLVVTQEDVELA 
ULFR01000059.1-55227 gccttgaGTAAGTA  Intron 5   TAGcgataaaacggacggggcg 
                     taagtat<0-----[55206:54269]-0>caagaatatttcaaatatc 
                     ctggact                       aaagtacggcgaaacgatc 


SPP00000033_1.0  288 YQEAMFNMATLNRT                          AGLMHTFNA 
                     YQEAM+NMA LNRT                          AGLMHTFNA 
                     YQEAMMNMARLNRT          A:A[gcc]        AGLMHTFNA 
ULFR01000059.1-54211 tcggaaaagacaaaGGTAAGGG  Intron 6   AAGCCggcacatag 
                     aaacttatcgtagc <1-----[54168:52784]-1>  cgttactac 
                     taaaggcgaaccga                          agcgtgctt 


SPP00000033_1.0  312 HAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGR- 
                     HAATDITGFGILGH+QNLAKQQRNEVSFVIHNLP++AKMAAVSKA G   
                     HAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNM 
ULFR01000059.1-52754 cggagaagtgacgcgcacgacccaggttgacaccgcgaagggaagtgaa 
                     acccatcgtgttgacaatcaaagaatctttaatcttcatcctgacggat 
                     tacgccaccccgccagtaaggaccaccctcccctctcagtatcattgtg 


SPP00000033_1.0  360 FGLLQGTSAETS                          GLLICLPREQA 
                     FGL+ GT  ETS                          GLLICLPREQA 
                     FGLMHGTCPETS          G:G[gga]        GLLICLPREQA 
ULFR01000059.1-52607 tgcacgatcgatGGTAAATA  Intron 7   CAGGAgccattccgcg 
                     tgttagcgcacc <1-----[52570:50188]-1>  gtttgtcgaac 
                     tttgcgttaata                          cctccaggaag 


SPP00000033_1.0  384 ARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATA 
                     ARFC+EIKS KYGEGHQAWI+GIVEKGNRTARIIDKPR+IEV P+ AT  
                     ARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQ 
ULFR01000059.1-50152 gcttggaatcatgggccgtaagaggagacagaaagaccaagggccggac 
                     cgtgcataccaagagaacgttgttaagagccgttaacgttatccatcca 
                     ggctcgcgtaaccatcgagttgtgagaccgcgtacgtgccacgcaactg 


SPP00000033_1.0  433 AV                                                
                      V                                                
                     NV                                                
ULFR01000059.1-50005 ag                                                
                     at                                                
                     ca                                                


//
Making a G in phase 1 intron
Making a M in phase 2 intron
Making a A in phase 1 intron
Making a G in phase 1 intron
>ULFR01000059.1:subseq(5103351,109278).pep
FNPESYELDKSFRLTRFTELKGTGCKVPQDILQKLLESLQENHFQEDEQFLGAVMPRLGI
GMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLL
GISNKMTDRERDKIMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFI
MPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMAR
LNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKAC
GNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARI
IDKPRIIEVAPQVATQNV
//
>ULFR01000059.1:subseq(5103351,109278).[59278:49998].sp
TTTAATCCAGAAAGTTACGAACTTGACAAAAGTTTTCGGTTAACCCGTTTCACGGAACTT
AAAGGCACCGGCTGTAAAGTGCCTCAGGACATTTTGCAGAAATTGCTCGAATCTTTACAA
GAAAATCATTTCCAAGAAGATGAACAGTTTTTGGGGGCTGTTATGCCAAGATTGGGAATT
GGCATGGATACTTGCGTTATTCCTTTGAGACACGGAGGTCTGTCTTTGGTCCAGACAACA
GACTACATTTATCCCATTGTGGACGACCCCTATATGATGGGACGCATCGCATGTGCCAAT
GTCCTTAGTGATCTCTATGCCATGGGAGTCACCGAATGTGACAATATGTTGATGCTTCTG
GGTATCAGTAATAAAATGACAGACAGGGAAAGAGATAAAATCATGCCTCTAATTATCCAA
GGATTTAAAGATGCTGCAGAAGAGGCAGGAACATCAGTGACTGGTGGTCAAACAGTATTA
AACCCTTGGATTGTTTTAGGAGGAGTGGCCACAACTGTCTGTCAGCCTAATGAGTTTATA
ATGCCAGATAATGCAGTCCCGGGAGATGTGCTGGTGTTAACGAAGCCATTGGGAACACAA
GTAGCTGTAGCTGTCCATCAGTGGTTAGACATTCCAGAAAAATGGAATAAAATCAAGCTG
GTCGTGACACAAGAAGACGTGGAACTTGCCTATCAAGAAGCAATGATGAACATGGCAAGA
CTCAACAGGACAGCCGCAGGGCTCATGCATACGTTCAATGCTCATGCAGCCACGGACATC
ACAGGCTTCGGCATCCTGGGCCACGCACAGAATCTAGCAAAGCAGCAACGCAACGAAGTC
TCCTTCGTTATCCACAACCTCCCTGTCCTTGCCAAAATGGCTGCAGTTAGCAAAGCTTGT
GGGAATATGTTTGGTCTTATGCACGGGACTTGTCCAGAAACTTCAGGAGGCCTCCTTATC
TGCTTACCGCGGGAACAAGCGGCGCGGTTCTGTGCCGAGATCAAGTCTCCAAAATACGGC
GAAGGTCACCAGGCATGGATTATTGGGATTGTGGAAAAGGGAAACCGCACGGCCAGGATT
ATAGACAAGCCTCGGATCATCGAAGTCGCGCCCCAAGTAGCCACTCAGAACGTA
//
ULFR01000059.1:subseq(5103351,109278)	GeneWise	match	59278	50000	574.46	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	59278	59104	0.00	-	0	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	intron	59103	58635	0.00	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	58634	58531	0.00	-	2	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	intron	58530	57739	0.00	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	57738	57631	0.00	-	0	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	intron	57630	56347	0.00	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	56346	56192	0.00	-	0	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	intron	56191	55298	0.00	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	55297	55207	0.00	-	1	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	intron	55206	54269	0.00	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	54268	54169	0.00	-	0	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	intron	54168	52784	0.00	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	52783	52571	0.00	-	2	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	intron	52570	50188	0.00	-	.	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
ULFR01000059.1:subseq(5103351,109278)	GeneWise	cds	50187	50000	0.00	-	2	ULFR01000059.1:subseq(5103351,109278)-genewise-prediction-1
//
