
genewise output
Score 538.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000146_2.0    1 MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
ULFR01000020.1:48182 aggactaggGTGAGTG  Intron 1   TAGcgctaggatatagtgaa 
                     tccgtgtga<0-----[48209:49999]-0>tacataaattcgctcct 
                     gcccgggac                       ggctgtgcctaattttg 


SPP00000146_2.0   27 GETVMSVKIIRNRLT                          IPAGYCFV 
                     G+ V+SVKIIRNRLT                          IPAGYCFV 
                     GQLVLSVKIIRNRLT           G:G[ggg]       IPAGYCFV 
ULFR01000020.1:50051 gccgcagaaacaataGGGTATTGA  Intron 2   CAGGacggtttg 
                     gatttgtattgagtc  <2-----[50098:51164]-2> tccgagtt 
                     aaacgtggatgtaga                          taactcta 


SPP00000146_2.0   51 EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                         
                     EFADLATAEKCLHKINGKPLPGATP                       T 
ULFR01000020.1:51190 gtggcgaggattcaaagacccggacGTAAGTA  Intron 3   CAGa 
                     atcatcccaagtaatagactcgccc<0-----[51265:53560]-0>c 
                     atttgcaagatataccggcttacgt                       a 


SPP00000146_2.0   77 KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN           S:S[agc]       PEYSLFV 
ULFR01000020.1:53564 actatatgatgaccgaAGGTAAGCT  Intron 4   CAGCcgttctg 
                     agtataaccagaacaa  <2-----[53614:56815]-2> caacttt 
                     gttaactcatgagttc                          aatcgtt 


SPP00000146_2.0  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDL+PDVDDGM+YEFFVKVYPSCRGGKVV+DQTGVS              
                     GDLSPDVDDGMIYEFFVKVYPSCRGGKVVVDQTGVS              
ULFR01000020.1:56838 ggctcgggggaatgttgagtcttcggaggggcaggt              
                     gatccataagttaatttataccggggatttaacgtc              
                     gttcttatcggatattaaacaacgtaagcgtggctc              


SPP00000146_2.0  137                           GYGFVKFTDELEQKRALTECQGA 
                                               GYGFVKF+DELEQKRAL ECQGA 
                                K:K[aaa]       GYGFVKFSDELEQKRALVECQGA 
ULFR01000020.1:56946 AAGTAAGTT  Intron 5   CAGAgtgtgattggcgcaagcggtcgg 
                       <2-----[56948:59268]-2> gagttatcaataaagcttagagc 
                                               ctttgacataggaaacgcgcggt 


SPP00000146_2.0  161 VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLGSKP+RLSVAIPK                          +R+K VE 
                     VGLGSKPIRLSVAIPK           A:A[gct]       NRLKMVE 
ULFR01000020.1:59339 ggcgtacactaggacaGCGTAAGTA  Intron 6   AAGTaccaagg 
                     tgtgcactgtgtctca  <2-----[59389:60261]-2> agtatta 
                     tctttggacgctcaaa                          tgtgggg 


SPP00000146_2.0  185 YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     Y+QMY+Y+YNQYYQQYQNYYA WGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YNQMYNYNYNQYYQQYQNYYAHWGYDQNTGSYSYSYPQYGYTQSTMQ   
ULFR01000020.1:60284 tacatatatacttcctcattgctgtgcaagatatatcctgtacaaac   
                     aaataaaaaaaaaaaaaaaacaggaaaacggagagacaagacagcta   
                     ctggcctctcgccagtgcccctgactaccctcccccaatccggttgg   


SPP00000146_2.0  232                        TYEEVGDDALE                
                                            TYEEVG+DALE                
                                            TYEEVGEDALE                
ULFR01000020.1:60425 GTGAGAG  Intron 7   CAGatgggggggtg                
                     <0-----[60425:60551]-0>caaatgaacta                
                                            ataagcataaa                


SPP00000146_2.0  243                           PMPQLDVTEANKEFMEQSEELYD 
                                               PMPQ DV+EANK+FMEQSEELYD 
                               D:D[gat]        PMPQTDVSEANKQFMEQSEELYD 
ULFR01000020.1:60585 GGTAAGGT  Intron 8   CAGATcaccaggaggaactagcaggctg 
                      <1-----[60586:61395]-1>  ctcacatgacaaattaagaataa 
                                               ggcggcgtaccggtgggcaacct 


SPP00000146_2.0  267 ALMDCHWQPLDTVSSEIPA                               
                     AL++CHWQPLD+VSSE+ A                               
                     ALIECHWQPLDSVSSELQA                               
ULFR01000020.1:61467 gtagtctcctgagttgccg                               
                     cttagagactagtccatac                               
                     cgaactggtgctgtaggac                               


//
Making a G in phase 2 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>ULFR01000020.1:subseq(3959210,111523).pep
MAASLWMGDLEPYMDENFISRAFATMGQLVLSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPTKRFKLNYATYGKQPDNSPEYSLFVGDLSPDVDDGMIYEFFVKVY
PSCRGGKVVVDQTGVSKGYGFVKFSDELEQKRALVECQGAVGLGSKPIRLSVAIPKANRL
KMVEYNQMYNYNYNQYYQQYQNYYAHWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGEDA
LEDPMPQTDVSEANKQFMEQSEELYDALIECHWQPLDSVSSELQA
//
>ULFR01000020.1:subseq(3959210,111523).[48182:61523].sp
ATGGCCGCCAGCCTGTGGATGGGAGACCTGGAGCCCTATATGGATGAGAACTTCATTTCA
AGAGCTTTTGCTACTATGGGACAACTAGTCCTGAGTGTGAAGATAATTCGGAATAGATTG
ACAGGGATTCCAGCAGGCTATTGCTTTGTAGAATTTGCTGATCTGGCCACAGCAGAGAAA
TGTTTACATAAAATCAACGGGAAGCCCCTTCCTGGAGCCACGCCTACAAAGCGTTTTAAA
TTAAACTATGCCACATATGGGAAACAGCCTGATAACAGCCCAGAATATTCCCTGTTTGTT
GGGGATCTTTCCCCTGATGTAGATGACGGGATGATATATGAATTTTTTGTAAAAGTATAC
CCATCATGCCGGGGTGGAAAAGTGGTCGTGGATCAGACGGGCGTTTCCAAAGGCTATGGT
TTTGTGAAATTCTCAGATGAACTGGAGCAAAAAAGAGCCCTGGTCGAGTGCCAGGGGGCT
GTTGGCCTTGGTTCTAAGCCGATACGCTTGAGCGTTGCCATACCAAAAGCTAATCGGCTT
AAGATGGTGGAGTACAATCAGATGTACAACTATAACTATAACCAGTACTACCAACAGTAT
CAGAACTACTACGCCCATTGGGGATACGATCAAAACACCGGCAGTTACAGCTACAGCTAC
CCACAATATGGCTACACGCAGAGTACTATGCAGACATATGAAGAAGTGGGCGAAGATGCA
TTAGAAGATCCGATGCCCCAGACGGACGTGAGTGAAGCCAACAAGCAGTTTATGGAGCAG
AGCGAAGAACTCTACGATGCCTTGATAGAATGCCATTGGCAGCCTTTGGACAGTGTGTCT
TCAGAGCTGCAAGCC
//
ULFR01000020.1:subseq(3959210,111523)	GeneWise	match	48182	61523	538.38	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	48182	48208	0.00	+	0	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	48209	49999	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	50000	50097	0.00	+	0	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	50098	51164	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	51165	51264	0.00	+	1	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	51265	53560	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	53561	53613	0.00	+	0	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	53614	56815	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	56816	56947	0.00	+	1	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	56948	59268	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	59269	59388	0.00	+	1	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	59389	60261	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	60262	60424	0.00	+	1	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	60425	60551	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	60552	60585	0.00	+	0	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	intron	60586	61395	0.00	+	.	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
ULFR01000020.1:subseq(3959210,111523)	GeneWise	cds	61396	61523	0.00	+	2	ULFR01000020.1:subseq(3959210,111523)-genewise-prediction-1
//
