TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo sapiens
# Complete

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000190.1  Casuarius casuarius isolate B32419 scaffold_189, ...  61.2    1e-10
PTFA01000038.1  Casuarius casuarius isolate B32419 scaffold_37, w...  30.8    6.0  


>PTFA01000190.1 Casuarius casuarius isolate B32419 scaffold_189, whole genome 
shotgun sequence
Length=1967023

 Score = 61.2 bits (147),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 29/33 (88%), Positives = 30/33 (91%), Gaps = 0/33 (0%)
 Frame = +3

Query  31      EPCGFEATYLELASAVKEQYPGIEIESRLGGTG  63
               EPCGFE TY ELASAVKE+YP IEIESRLGGTG
Sbjct  143433  EPCGFEPTYQELASAVKEEYPDIEIESRLGGTG  143531


 Score = 56.6 bits (135),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 27/27 (100%), Gaps = 0/27 (0%)
 Frame = +1

Query  63      GAFEIEINGQLVFSKLENGGFPYEKDL  89
               GAFEIEINGQLVFSKLENGGFPYEKD+
Sbjct  144073  GAFEIEINGQLVFSKLENGGFPYEKDV  144153


 Score = 53.1 bits (126),  Expect = 1e-07, Method: Composition-based stats.
 Identities = 26/32 (81%), Positives = 26/32 (81%), Gaps = 0/32 (0%)
 Frame = +3

Query  84      PYEKDLIEAIRRASNGETLEKITNSRPPCVIL  115
               P    LIEAIRRA NGE LEKITNSRPPCVIL
Sbjct  144540  PLSPQLIEAIRRARNGEPLEKITNSRPPCVIL  144635


>PTFA01000038.1 Casuarius casuarius isolate B32419 scaffold_37, whole genome 
shotgun sequence
Length=6381071

 Score = 30.8 bits (68),  Expect = 6.0, Method: Composition-based stats.
 Identities = 13/32 (41%), Positives = 18/32 (56%), Gaps = 0/32 (0%)
 Frame = +2

Query  27       VEYCEPCGFEATYLELASAVKEQYPGIEIESR  58
                V YC PC F A +L + S V   Y   ++E+R
Sbjct  4917743  VNYCAPCSFPAFWLPILSQVLGCYHSCDLETR  4917838



Lambda      K        H        a         alpha
   0.314    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 10067847225


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
