TBLASTN 2.6.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: genome.fa
           3,184 sequences; 1,209,001,349 total letters



Query= SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo sapiens
# Complete

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

PTFA01000548.1  Casuarius casuarius isolate B32419 scaffold_547, ...  35.8    0.043


>PTFA01000548.1 Casuarius casuarius isolate B32419 scaffold_547, whole genome 
shotgun sequence
Length=175818

 Score = 35.8 bits (81),  Expect = 0.043, Method: Composition-based stats.
 Identities = 16/24 (67%), Positives = 19/24 (79%), Gaps = 0/24 (0%)
 Frame = -2

Query  38     GEGTPQATGFFEVMVAGKLIHSKK  61
              GEGT + TG+FEV V G L+HSKK
Sbjct  16232  GEGTREVTGWFEVTVGGTLVHSKK  16161



Lambda      K        H        a         alpha
   0.320    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 10070076025


  Database: genome.fa
    Posted date:  Oct 19, 2018  9:06 AM
  Number of letters in database: 1,209,001,349
  Number of sequences in database:  3,184



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
